Evidence map›Paper›PMID 33903778›Full record

ArticleJournal of molecular structure2021

In search of RdRp and Mpro inhibitors against SARS CoV-2: Molecular docking, molecular dynamic simulations and ADMET analysis.

Normi D Gajjar, Tejas M Dhameliya, Gaurang B Shah

Abstract read
In one paragraph

Article in Journal of molecular structure, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. ACS omega · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Future virology · 2023
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. ChemistrySelect · 2022
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Normi D GajjarL.M. College of Pharmacy, Navrangpura, Ahmedabad 380 009, Gujarat, India.
Tejas M DhameliyaL.M. College of Pharmacy, Navrangpura, Ahmedabad 380 009, Gujarat, India.
Gaurang B ShahL.M. College of Pharmacy, Navrangpura, Ahmedabad 380 009, Gujarat, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Corona Virus Disease 2019 (COVID-19) caused by Severe Acute Respiratory Syndrome coronavirus (SARS CoV-2) has been declared a worldwide pandemic by WHO recently. The complete understanding of the complex genomic structure of SARS CoV-2 has enabled the use of computational tools in search of SARS CoV-2 inhibitors against the multiple proteins responsible for its entry and multiplication in human cells. With this endeavor, 177 natural, anti-viral chemical entities and their derivatives, selected through the critical analysis of the literatures, were studied using pharmacophore screening followed by molecular docking against RNA dependent RNA polymerase and main protease. The identified hits have been subjected to molecular dynamic simulations to study the stability of ligand-protein complexes followed by ADMET analysis and Lipinski filters to confirm their drug likeliness. It has led to an important start point in the drug discovery and development of therapeutic agents against SARS CoV-2.

Indexed as

3CLpro, 3-chymotrypsin-like proteaseACE, Angiotensin converting enzymeADMET, Absorption, distribution, metabolism, excretion, and toxicityASL, Atom specification languageCOVID-19, Corona virus disease-2019Dscore, Druggability scoreEM, Electron microscopyHB, Hydrogen bondMD simulationMD simulation, Molecular dynamic simulationMolecular dockingMproMpro, Main proteaseNatural productsnsp, Non-structural proteinPLpro, Papain-like proteaseRdRpRdRP, RNA-dependent RNA polymeraseRMSD, Root mean square deviationRMSF, Root mean square fluctuationRoG, Radius of gyrationSARS CoV-2SARS CoV-2, Severe acute respiratory syndrome coronavirus 2SASA, Solvent accessible surface areaSP, Standard precisionWHO, World health organization

Identifiers

PMID33903778
PMCPMC8059878

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.