Evidence map›Paper›PMID 33903237›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

Cellular-resolution gene expression profiling in the neonatal marmoset brain reveals dynamic species- and region-specific differences.

Yoshiaki Kita, Hirozumi Nishibe, Yan Wang, Tsutomu Hashikawa, Satomi S Kikuchi, Mami U, Aya C Yoshida, Chihiro Yoshida, Takashi Kawase, Shin Ishii and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 50 citations in OpenAlex.

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  7. A Preoptic Neurocircuit That Modulates Metabolic Flexibility.bioRxiv : the preprint server for biology · 2026
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  13. Astrocyte regional specialization is shaped by postnatal development.bioRxiv : the preprint server for biology · 2025
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  14. Article
  15. Article
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  17. An open access resource for marmoset neuroscientific apparatus.Imaging neuroscience (Cambridge, Mass.) · 2025
    Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Yoshiaki KitaLaboratory for Molecular Mechanisms of Brain Development, Center for Brain Science, RIKEN, Saitama 351-0198, Japan.
Hirozumi NishibeLaboratory for Molecular Mechanisms of Brain Development, Center for Brain Science, RIKEN, Saitama 351-0198, Japan.
Yan WangLaboratory for Molecular Mechanisms of Brain Development, Center for Brain Science, RIKEN, Saitama 351-0198, Japan.
Tsutomu HashikawaLaboratory for Molecular Mechanisms of Brain Development, Center for Brain Science, RIKEN, Saitama 351-0198, Japan.
Satomi S KikuchiLaboratory for Molecular Mechanisms of Brain Development, Center for Brain Science, RIKEN, Saitama 351-0198, Japan.
Mami ULaboratory for Molecular Mechanisms of Brain Development, Center for Brain Science, RIKEN, Saitama 351-0198, Japan.
Aya C YoshidaLaboratory for Molecular Mechanisms of Brain Development, Center for Brain Science, RIKEN, Saitama 351-0198, Japan.
Chihiro YoshidaLaboratory for Molecular Mechanisms of Brain Development, Center for Brain Science, RIKEN, Saitama 351-0198, Japan.
Takashi KawaseIntegrated Systems Biology Laboratory, Department of Systems Science, Graduate School of Informatics, Kyoto University, Kyoto 606-8501, Japan.
Shin IshiiIntegrated Systems Biology Laboratory, Department of Systems Science, Graduate School of Informatics, Kyoto University, Kyoto 606-8501, Japan.ORCID 0000-0001-9385-8230
Henrik SkibbeBrain Image Analysis Unit, Center for Brain Science, RIKEN, Saitama 351-0198, Japan.
Tomomi ShimogoriLaboratory for Molecular Mechanisms of Brain Development, Center for Brain Science, RIKEN, Saitama 351-0198, Japan; tomomi.shimogori@riken.jp.ORCID 0000-0002-6931-5401
RIKEN Center for Brain Science · JPKyoto University · JP

Funding

Developmental cell census of human and non-human primate brainU01MH124619 · NIMH · YALE UNIVERSITY · PI SESTAN, NENAD · 2020 to 2022
$3.3M
NIMH NIH HHS U01 MH124619
6 · The paper itself

Abstract

Precise spatiotemporal control of gene expression in the developing brain is critical for neural circuit formation, and comprehensive expression mapping in the developing primate brain is crucial to understand brain function in health and disease. Here, we developed an unbiased, automated, large-scale, cellular-resolution in situ hybridization (ISH)-based gene expression profiling system (GePS) and companion analysis to reveal gene expression patterns in the neonatal New World marmoset cortex, thalamus, and striatum that are distinct from those in mice. Gene-ontology analysis of marmoset-specific genes revealed associations with catalytic activity in the visual cortex and neuropsychiatric disorders in the thalamus. Cortically expressed genes with clear area boundaries were used in a three-dimensional cortical surface mapping algorithm to delineate higher-order cortical areas not evident in two-dimensional ISH data. GePS provides a powerful platform to elucidate the molecular mechanisms underlying primate neurobiology and developmental psychiatric and neurological disorders.

Indexed as

AnimalsAnimals, NewbornBrainCallithrixCorpus StriatumGene Expression Regulation, DevelopmentalHumansIn Situ HybridizationMiceSpecies SpecificityTranscriptomeVisual Cortexdatabasedevelopmental disorderevolutiongene expressionnonhuman primate

Identifiers

PMID33903237
PMCPMC8106353
OpenAlexW3158825649

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.