Evidence map›Paper›PMID 33902487›Full record

ArticleBMC infectious diseases2021

The frequency of cytomegalovirus non-ELR UL146 genotypes in neonates with congenital CMV disease is comparable to strains in the background population.

Christian Berg, Mette M Rosenkilde, Thomas Benfield, Lene Nielsen, Thomas Sundelin, Hans R Lüttichau

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In one paragraph

Article in BMC infectious diseases, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Genomic and geographical structure of human cytomegalovirus.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Christian BergInfectious Diseases Unit, Department of Medicine, Copenhagen University Hospital, Herlev Gentofte, DK-2730, Herlev, Denmark. Christian.Berg@regionh.dk.
Mette M RosenkildeLaboratory for Molecular Pharmacology, Department of Biomedical Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, DK-2200, Copenhagen, Denmark.
Thomas BenfieldCenter for Research and Disruption of Infectious Diseases (CREDID), Department of Infectious Diseases, Copenhagen University Hospital, Amager Hvidovre, DK-2650, Hvidovre, Denmark.
Lene NielsenDepartment of Clinical Microbiology, Copenhagen University Hospital, Herlev Gentofte, DK-2730, Herlev, Denmark.
Thomas SundelinDepartment of Clinical Microbiology, Copenhagen University Hospital, Herlev Gentofte, DK-2730, Herlev, Denmark.
Hans R LüttichauInfectious Diseases Unit, Department of Medicine, Copenhagen University Hospital, Herlev Gentofte, DK-2730, Herlev, Denmark. Hans.Rudolf.von.Luttichau@regionh.dk.ORCID http://orcid.org/0000-0002-5428-4075
University of Copenhagen · DKGentofte Hospital · DKCopenhagen University Hospital · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCongenital cytomegalovirus disease (cCMV) is common and can be fatal or cause severe sequelae. Circulating strains of cytomegalovirus carry a high number of variable or disrupted genes. One of these is UL146, a highly diverse gene with 14 distinct genotypes encoding a CXC-chemokine involved in viral dissemination. UL146 genotypes 5 and 6 lack the conserved ELR motif, potentially affecting strain virulence. Here, we investigate whether UL146 genotypes 5 and 6 were associated with congenital CMV infection.

methodsViral DNA was extracted and UL146 sequenced from 116 neonatal dried blood spots (DBS) stored in the Danish National Biobank since 1982 and linked to registered cCMV cases through a personal identifier. These sequences were compared to UL146 control sequences obtained from CMV DNA extracted from 83 urine samples from children with suspected bacterial urinary tract infections.

resultsThree non-ELR UL146 genotypes (5 and 6) were observed among the cases (2.6%) and two were observed among the controls (2.4%; P > 0.99). Additionally, no significant association with cCMV was found for the other 12 genotypes in a post-hoc analysis, although genotype 8 showed a tendency to be more frequent among cases with 12 observations against three (P = 0.10). All fourteen genotypes were found to have little intra-genotype variation. Viral load, gender, and sample age were not found to be associated with any particular UL146 genotype.

conclusionsNo particular UL146 genotype was associated with cCMV in this nationwide retrospective case-control study. Associations between CMV disease and disrupted or polymorph CMV genes among immunosuppressed people living with HIV/AIDS and transplant recipients should be investigated in future studies.

Indexed as

GenotypeAmino Acid MotifsAmino Acid SequenceBase SequenceCase-Control StudiesChemokines, CXCCytomegalovirusCytomegalovirus InfectionsDenmarkDNA, ViralFemaleHumansInfantInfant, NewbornInfant, Newborn, DiseasesMaleChemokines, CXCDNA, Viralviral chemokine CXC-1, CytomegalovirusViral ProteinscCMVCytomegalovirusDBSELRGenotypingUL146vCXCL1

Identifiers

PMID33902487
PMCPMC8077815
OpenAlexW3158330558

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.