Evidence map›Paper›PMID 33901266›Full record

ArticlePLoS pathogens2021

T cell immune discriminants of HIV reservoir size in a pediatric cohort of perinatally infected individuals.

Stefano Rinaldi, Lesley de Armas, Sara Dominguez-Rodríguez, Suresh Pallikkuth, Vinh Dinh, Li Pan, Kathleen Gӓrtner, Rajendra Pahwa, Nicola Cotugno, Pablo Rojo and 9 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 18 citations in OpenAlex.

  1. Pooled it
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  8. Accelerated CD8iScience · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 4 countries.

Stefano RinaldiDepartment of Microbiology and Immunology, Miller School of Medicine, University of Miami, Miami, Florida.ORCID 0000-0002-1499-4435
Lesley de ArmasDepartment of Microbiology and Immunology, Miller School of Medicine, University of Miami, Miami, Florida.
Sara Dominguez-RodríguezHospital Universitario 12 de Octubre, Madrid, Spain.ORCID 0000-0003-3747-9265
Suresh PallikkuthDepartment of Microbiology and Immunology, Miller School of Medicine, University of Miami, Miami, Florida.
Vinh DinhDepartment of Microbiology and Immunology, Miller School of Medicine, University of Miami, Miami, Florida.ORCID 0000-0002-8148-8508
Li PanDepartment of Microbiology and Immunology, Miller School of Medicine, University of Miami, Miami, Florida.ORCID 0000-0002-3388-5509
Kathleen GӓrtnerUCL Great Ormond Street Institute of Child Health, London, United Kingdom.ORCID 0000-0003-2221-6251
Rajendra PahwaDepartment of Microbiology and Immunology, Miller School of Medicine, University of Miami, Miami, Florida.
Nicola CotugnoBambino Gesu Children's Hospital IRCCS, Rome, Italy.ORCID 0000-0002-7748-1581
Pablo RojoHospital Universitario 12 de Octubre, Madrid, Spain.ORCID 0000-0002-0197-5462
Eleni NastouliUCL Great Ormond Street Institute of Child Health, London, United Kingdom.
Nigel KleinUCL Great Ormond Street Institute of Child Health, London, United Kingdom.ORCID 0000-0003-3925-9258
Caroline FosterImperial College Healthcare NHS Trust, London, United Kingdom.ORCID 0000-0001-8278-8564
Anita De RossiIstituto Oncologico Veneto IOV-IRCCS, Padova, Italy.ORCID 0000-0001-6435-7509
Carlo GiaquintoUniversity of Padova, Padova, Italy.
Paolo RossiBambino Gesu Children's Hospital IRCCS, Rome, Italy.ORCID 0000-0003-2620-7918
Paolo PalmaBambino Gesu Children's Hospital IRCCS, Rome, Italy.ORCID 0000-0002-3066-4719
Savita PahwaDepartment of Microbiology and Immunology, Miller School of Medicine, University of Miami, Miami, Florida.
EPIICAL consortium
University of Miami · USBambino Gesù Children's Hospital · ITGreat Ormond Street Hospital · GBHospital Universitario 12 De Octubre · ESImperial College Healthcare NHS Trust · GBIstituto Oncologico Veneto · ITUniversity of Padua · IT

Funding

University of Miami Developmental Center for AIDS Research (D-CFAR)P30AI073961 · NIAID · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Savita Pahwa · 2007 to 2026
$33.8M
Immunity and HIV persistence in perinatal HIV infectionR01AI127347 · NIAID · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI PAHWA, SAVITA · 2016 to 2020
$3.3M
NIAID NIH HHS P30 AI073961NIAID NIH HHS R01 AI127347
6 · The paper itself

Abstract

The size of the latent HIV reservoir is associated with the timing of therapeutic interventions and overall health of the immune system. Here, we demonstrate that T cell phenotypic signatures associate with viral reservoir size in a cohort of HIV vertically infected children and young adults under durable viral control, and who initiated anti-retroviral therapy (ART) <2 years old. Flow cytometry was used to measure expression of immune activation (IA), immune checkpoint (ICP) markers, and intracellular cytokine production after stimulation with GAG peptides in CD4 and CD8 T cells from cross-sectional peripheral blood samples. We also evaluated the expression of 96 genes in sort-purified total CD4 and CD8 T cells along with HIV-specific CD4 and CD8 T cells using a multiplexed RT-PCR approach. As a measure of HIV reservoir, total HIV-DNA quantification by real-time PCR was performed. Poisson regression modeling for predicting reservoir size using phenotypic markers revealed a signature that featured frequencies of PD-1+CD4 T cells, TIGIT+CD4 T cells and HIV-specific (CD40L+) CD4 T cells as important predictors and it also shows that time of ART initiation strongly affects their association with HIV-DNA. Further, gene expression analysis showed that the frequencies of PD-1+CD4 T cells associated with a CD4 T cell molecular profile skewed toward an exhausted Th1 profile. Our data provide a link between immune checkpoint molecules and HIV persistence in a pediatric cohort as has been demonstrated in adults. Frequencies of PD-1+ and TIGIT+CD4 T cells along with the frequency of HIV-specific CD4 T cells could be associated with the mechanism of viral persistence and may provide insight into potential targets for therapeutic intervention.

Indexed as

AdolescentAge of OnsetCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesChildCohort StudiesFemaleHIV-1HIV InfectionsHumansLymphocyte ActivationLymphocyte CountMaleT-LymphocytesViral LoadVirus Latency

Identifiers

PMID33901266
PMCPMC8112655
OpenAlexW3158431933

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.