Evidence map›Paper›PMID 33900064›Full record

ArticleACS synthetic biology2021

CRISPR-Mediated Strand Displacement Logic Circuits with Toehold-Free DNA.

Roser Montagud-Martínez, María Heras-Hernández, Lucas Goiriz, José-Antonio Daròs, Guillermo Rodrigo

Open access · hybridAbstract read
In one paragraph

Article in ACS synthetic biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Twinkle-Catalyzed Toehold-Mediated DNA Strand Displacement Reaction.Journal of the American Chemical Society · 2023
    Article
  7. Article
  8. Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Roser Montagud-MartínezI2SysBio, CSIC - Universitat València, Cat. Agustín Escardino 9, 46980 Paterna, Spain.
María Heras-HernándezI2SysBio, CSIC - Universitat València, Cat. Agustín Escardino 9, 46980 Paterna, Spain.
Lucas GoirizI2SysBio, CSIC - Universitat València, Cat. Agustín Escardino 9, 46980 Paterna, Spain.
José-Antonio DaròsIBMCP, CSIC - Universitat Politècnica València, Av. Naranjos s/n, 46022 Valencia, Spain.ORCID 0000-0002-6535-2889
Guillermo RodrigoI2SysBio, CSIC - Universitat València, Cat. Agustín Escardino 9, 46980 Paterna, Spain.ORCID 0000-0002-1871-9617
Institute for Integrative Systems Biology · ESInstituto de Biología Molecular y Celular de Plantas · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA nanotechnology, and DNA computing in particular, has grown extensively over the past decade to end with a variety of functional stable structures and dynamic circuits. However, the use as designer elements of regular DNA pieces, perfectly complementary double strands, has remained elusive. Here, we report the exploitation of CRISPR-Cas systems to engineer logic circuits based on isothermal strand displacement that perform with toehold-free double-stranded DNA. We designed and implemented molecular converters for signal detection and amplification, showing good interoperability between enzymatic and nonenzymatic processes. Overall, these results contribute to enlarge the repertoire of substrates and reactions (hardware) for DNA computing.

Indexed as

Computers, MolecularCRISPR-Cas SystemsGene Regulatory NetworksClustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Associated Protein 9DNA, Single-StrandedEndopeptidase KGenetic EngineeringNanotechnologyRibonuclease HRibonuclease, PancreaticRNA, Guide, CRISPR-Cas SystemsStreptococcus pyogenesTranscription, GeneticCRISPR-Associated Protein 9DNA, Single-StrandedEndopeptidase KRibonuclease HRibonuclease, PancreaticRNA, Guide, CRISPR-Cas Systemsbiological computingDNA nanotechnologysynthetic biology

Identifiers

PMID33900064
PMCPMC8489798
OpenAlexW3158602568

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.