Statistics and Patterns of Occurrence of Simple Tandem Repeats in SARS-CoV-1 and SARS-CoV-2 Genomic Data.

Hossein Savari, Hassan Shafiey, Abdorreza Savadi, Nayyereh Saadati, Mahmoud Naghibzadeh

Open access · goldAbstract read

In one paragraph

Article in Data in brief, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it

0cells of the map it votes in

0citing papers in PubMed

0.1field-weighted citation impact, top 57% of its field

1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Hossein SavariKnowledge Engineering Research Group, Computer Engineering Dept., Ferdowsi University of Mashhad, Mashhad, Iran.

Hassan ShafieyHigh Performance Computing Lab., Computer Engineering Dept., Ferdowsi University of Mashhad, Mashhad, Iran.

Abdorreza SavadiHigh Performance Computing Lab., Computer Engineering Dept., Ferdowsi University of Mashhad, Mashhad, Iran.

Nayyereh SaadatiGhaem Hospital, Department of Internal Medicine, Mashhad University of Medical Sciences, Mashhad, Iran.

Mahmoud NaghibzadehKnowledge Engineering Research Group, Computer Engineering Dept., Ferdowsi University of Mashhad, Mashhad, Iran.

Ferdowsi University of Mashhad · IRMashhad University of Medical Sciences · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The data presented in this article is related to the research article entitled "Developing an ultra-efficient microsatellite discoverer to find structural differences between SARS-CoV-1 and Covid-19" [Naghibzadeh et al. 2020]. Simple tandem repeats (microsatellites, STR) are extracted and investigated across all viral families from four main viral realms. An ultra-efficient and reliable software, which is recently developed by the authors and published in the above-mentioned article, is used for extracting STRs. The analysis is done for k-mer tandem repeats where k varies from one to seven. In particular the frequency of trimer STRs is shown to be low in RNA viruses compared with DNA viruses. Special attention is paid to seven zoonotic viruses from family Coronaviridae which caused several severe human crises during last two decades including MERS, SARS 2003 and Covid-19.

Indexed as

RNA data analysisSARS-CoV-1SARS-CoV-2Tandem repeats

Identifiers

PMID33898662

DOI10.1016/j.dib.2021.107057

PMCPMC8057928

OpenAlexW3156804358

What OpenQuestion holds

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LicenceCC BY

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.