Evidence map›Paper›PMID 33898398›Full record

ArticleFrontiers in bioengineering and biotechnology2021

Integration of Proteomics and Metabolomics Into the Design, Build, Test, Learn Cycle to Improve 3-Hydroxypropionic Acid Production in

Kyle R Pomraning, Ziyu Dai, Nathalie Munoz, Young-Mo Kim, Yuqian Gao, Shuang Deng, Joonhoon Kim, Beth A Hofstad, Marie S Swita, Teresa Lemmon and 10 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in bioengineering and biotechnology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Itaconic acid production is regulated by LaeA inMetabolic engineering communications · 2022
    Article
  8. Tuning a high performing multiplexed-CRISPRiMetabolic engineering communications · 2022
    Article
  9. The survivor strain: isolation and characterization ofFrontiers in bioengineering and biotechnology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 3 institutions in 1 country.

Kyle R PomraningPacific Northwest National Laboratory, Richland, WA, United States.
Ziyu DaiPacific Northwest National Laboratory, Richland, WA, United States.
Nathalie MunozPacific Northwest National Laboratory, Richland, WA, United States.
Young-Mo KimPacific Northwest National Laboratory, Richland, WA, United States.
Yuqian GaoPacific Northwest National Laboratory, Richland, WA, United States.
Shuang DengPacific Northwest National Laboratory, Richland, WA, United States.
Joonhoon KimPacific Northwest National Laboratory, Richland, WA, United States.
Beth A HofstadPacific Northwest National Laboratory, Richland, WA, United States.
Marie S SwitaPacific Northwest National Laboratory, Richland, WA, United States.
Teresa LemmonPacific Northwest National Laboratory, Richland, WA, United States.
James R CollettPacific Northwest National Laboratory, Richland, WA, United States.
Ellen A PaniskoPacific Northwest National Laboratory, Richland, WA, United States.
Bobbie-Jo M Webb-RobertsonPacific Northwest National Laboratory, Richland, WA, United States.
Jeremy D ZuckerPacific Northwest National Laboratory, Richland, WA, United States.
Carrie D NicoraPacific Northwest National Laboratory, Richland, WA, United States.
Henrique De PaoliLawrence Berkeley National Laboratory, Berkeley, CA, United States.
Scott E BakerPacific Northwest National Laboratory, Richland, WA, United States.
Kristin E Burnum-JohnsonPacific Northwest National Laboratory, Richland, WA, United States.
Nathan J HillsonLawrence Berkeley National Laboratory, Berkeley, CA, United States.
Jon K MagnusonPacific Northwest National Laboratory, Richland, WA, United States.
Pacific Northwest National Laboratory · USLawrence Berkeley National Laboratory · USJoint BioEnergy Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biological engineering of microorganisms to produce value-added chemicals is a promising route to sustainable manufacturing. However, overproduction of metabolic intermediates at high titer, rate, and yield from inexpensive substrates is challenging in non-model systems where limited information is available regarding metabolic flux and its control in production conditions. Integrated multi-omic analyses of engineered strains offers an in-depth look at metabolites and proteins directly involved in growth and production of target and non-target bioproducts. Here we applied multi-omic analyses to overproduction of the polymer precursor 3-hydroxypropionic acid (3HP) in the filamentous fungus

Indexed as

3HP3-hydroxypropionic acid (3-HP)Agile BioFoundryAspergillus pseudoterreusbeta-alanine pathway

Identifiers

PMID33898398
PMCPMC8058442
OpenAlexW3146422543

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.