Evidence map›Paper›PMID 33895855›Full record

ArticleInternational journal of legal medicine2021

Re-evaluation of single nucleotide variants and identification of structural variants in a cohort of 45 sudden unexplained death cases.

Jacqueline Neubauer, Shouyu Wang, Giancarlo Russo, Cordula Haas

Open access · hybridAbstract read
In one paragraph

Article in International journal of legal medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Jacqueline Neubauer *Zurich Institute of Forensic Medicine, University of Zurich, Zurich, Switzerland. jacqueline.neubauer@irm.uzh.ch.ORCID http://orcid.org/0000-0002-9472-7803
Shouyu Wang *Zurich Institute of Forensic Medicine, University of Zurich, Zurich, Switzerland.
Giancarlo RussoFunctional Genomics Center Zurich (FGCZ), University of Zurich/ETH, Zurich, Switzerland.ORCID http://orcid.org/0000-0003-0707-2640
Cordula HaasZurich Institute of Forensic Medicine, University of Zurich, Zurich, Switzerland.ORCID http://orcid.org/0000-0001-8122-1427
University of Zurich · CHShanghai Medical College of Fudan University · CN

Funding

China Scholarship Council 201906240236
6 · The paper itself

Abstract

Sudden unexplained death (SUD) takes up a considerable part in overall sudden death cases, especially in adolescents and young adults. During the past decade, many channelopathy- and cardiomyopathy-associated single nucleotide variants (SNVs) have been identified in SUD studies by means of postmortem molecular autopsy, yet the number of cases that remain inconclusive is still high. Recent studies had suggested that structural variants (SVs) might play an important role in SUD, but there is no consensus on the impact of SVs on inherited cardiac diseases. In this study, we searched for potentially pathogenic SVs in 244 genes associated with cardiac diseases. Whole-exome sequencing and appropriate data analysis were performed in 45 SUD cases. Re-analysis of the exome data according to the current ACMG guidelines identified 14 pathogenic or likely pathogenic variants in 10 (22.2%) out of the 45 SUD cases, whereof 2 (4.4%) individuals had variants with likely functional effects in the channelopathy-associated genes SCN5A and TRDN and 1 (2.2%) individual in the cardiomyopathy-associated gene DTNA. In addition, 18 structural variants (SVs) were identified in 15 out of the 45 individuals. Two SVs with likely functional impairment were found in the coding regions of PDSS2 and TRPM4 in 2 SUD cases (4.4%). Both were identified as heterozygous deletions, which were confirmed by multiplex ligation-dependent probe amplification. In conclusion, our findings support that SVs could contribute to the pathology of the sudden death event in some of the cases and therefore should be investigated on a routine basis in suspected SUD cases.

Indexed as

Polymorphism, Single NucleotideAdolescentAdultAlkyl and Aryl TransferasesCarrier ProteinsChildChild, PreschoolCohort StudiesDeath, SuddenDystrophin-Associated ProteinsExome SequencingFemaleGenomic Structural VariationHeart DiseasesHumansInfantAlkyl and Aryl TransferasesCarrier ProteinsDTNA protein, humanDystrophin-Associated ProteinsMuscle ProteinsNAV1.5 Voltage-Gated Sodium ChannelNeuropeptidesprenyl diphosphate synthase, subunit 2, humanSCN5A protein, humanTRDN protein, humanTRPM4 protein, humanTRPM Cation ChannelsCopy number variation (CNV)Exome sequencingForensicsMassively parallel sequencing (MPS)Single nucleotide variant (SNV)Structural variants (SV)

Identifiers

PMID33895855
PMCPMC8205883
OpenAlexW3159335648

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.