Evidence map›Paper›PMID 33895137›Full record

ArticleThe Journal of biological chemistry

ZapG (YhcB/DUF1043), a novel cell division protein in gamma-proteobacteria linking the Z-ring to septal peptidoglycan synthesis.

Jitender Mehla, George Liechti, Randy M Morgenstein, J Harry Caufield, Ali Hosseinnia, Alla Gagarinova, Sadhna Phanse, Norman Goodacre, Mary Brockett, Neha Sakhawalkar and 7 more

Open access · goldAbstract read
In one paragraph

Article in The Journal of biological chemistry. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

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  7. Suppressors ofInternational journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 3 countries.

Jitender MehlaCenter for the Study of Biological Complexity, Virginia Commonwealth University, Richmond, Virginia, USA. Electronic address: jitendermehla@ou.edu.
George LiechtiDepartment of Microbiology and Immunology, Henry Jackson Foundation, Uniformed Services University of the Health Sciences, Bethesda, Maryland, USA.
Randy M MorgensteinDepartment of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, Oklahoma, USA.
J Harry CaufieldCenter for the Study of Biological Complexity, Virginia Commonwealth University, Richmond, Virginia, USA.
Ali HosseinniaDepartment of Biochemistry, Research and Innovation Centre, University of Regina, Regina, Saskatchewan, Canada.
Alla GagarinovaDepartment of Biochemistry, College of Medicine, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.
Sadhna PhanseDepartment of Biochemistry, Research and Innovation Centre, University of Regina, Regina, Saskatchewan, Canada.
Norman GoodacreCenter for the Study of Biological Complexity, Virginia Commonwealth University, Richmond, Virginia, USA.
Mary BrockettDepartment of Microbiology and Immunology, Henry Jackson Foundation, Uniformed Services University of the Health Sciences, Bethesda, Maryland, USA.
Neha SakhawalkarCenter for the Study of Biological Complexity, Virginia Commonwealth University, Richmond, Virginia, USA.
Mohan BabuDepartment of Biochemistry, Research and Innovation Centre, University of Regina, Regina, Saskatchewan, Canada.
Rong XiaoNexomics Biosciences Inc., Rocky Hill, New Jersey, USA; Department of Chemistry and Chemical Biology, and Center for Biotechnology and Interdisciplinary Sciences, Rensselaer Polytechnic Institute, Troy, New York, USA.
Gaetano T MontelioneDepartment of Chemistry and Chemical Biology, and Center for Biotechnology and Interdisciplinary Sciences, Rensselaer Polytechnic Institute, Troy, New York, USA; Department of Chemistry and Chemical Biology, Rensselaer Polytechnic Institute, Troy, New York, USA.
Sergey VorobievDepartment of Chemistry and Chemical Biology, and Center for Biotechnology and Interdisciplinary Sciences, Rensselaer Polytechnic Institute, Troy, New York, USA; Department of Biological Sciences, Columbia University, New York, New York, USA.
Tanneke den BlaauwenBacterial Cell Biology & Physiology, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, Netherlands.
John F HuntDepartment of Chemistry and Chemical Biology, and Center for Biotechnology and Interdisciplinary Sciences, Rensselaer Polytechnic Institute, Troy, New York, USA; Department of Biological Sciences, Columbia University, New York, New York, USA.
Peter UetzCenter for the Study of Biological Complexity, Virginia Commonwealth University, Richmond, Virginia, USA. Electronic address: uetz@vcu.edu.
Virginia Commonwealth University · USRensselaer Polytechnic Institute · USUniversity of Regina · CAUniformed Services University of the Health Sciences · USOklahoma State University · USUniversity of Amsterdam · NLUniversity of Saskatchewan · CA

Funding

University of Georgia ProjectU54GM094597 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI MONTELIONE, GAETANO T · 2010 to 2014
$36.9M
Membrane Protein Structure Using Evolutionary Couplings and Sparse NMR DataR01GM120574 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI MONTELIONE, GAETANO T · 2017 to 2020
$2.3M
Cellular organization, division, and differentiation in an ancient, genetically reduced bacteriumR35GM138202 · NIGMS · HENRY M. JACKSON FDN FOR THE ADV MIL/MED · PI GEORGE WARREN LIECHTI · 2020 to 2026
$2.0M
Integrative functional mapping of the Escherichia coli membrane interactomeR01GM109895 · NIGMS · VIRGINIA COMMONWEALTH UNIVERSITY · PI SAIER, MILTON H., UETZ, PETER HANS · 2014 to 2017
$1.1M
NIGMS NIH HHS R01 GM109895NIGMS NIH HHS R01 GM120574NIGMS NIH HHS R35 GM138202NIGMS NIH HHS U54 GM094597
6 · The paper itself

Abstract

YhcB, a poorly understood protein conserved across gamma-proteobacteria, contains a domain of unknown function (DUF1043) and an N-terminal transmembrane domain. Here, we used an integrated approach including X-ray crystallography, genetics, and molecular biology to investigate the function and structure of YhcB. The Escherichia coli yhcB KO strain does not grow at 45 °C and is hypersensitive to cell wall-acting antibiotics, even in the stationary phase. The deletion of yhcB leads to filamentation, abnormal FtsZ ring formation, and aberrant septum development. The Z-ring is essential for the positioning of the septa and the initiation of cell division. We found that YhcB interacts with proteins of the divisome (e.g., FtsI, FtsQ) and elongasome (e.g., RodZ, RodA). Seven of these interactions are also conserved in Yersinia pestis and/or Vibrio cholerae. Furthermore, we mapped the amino acid residues likely involved in the interactions of YhcB with FtsI and RodZ. The 2.8 Å crystal structure of the cytosolic domain of Haemophilus ducreyi YhcB shows a unique tetrameric α-helical coiled-coil structure likely to be involved in linking the Z-ring to the septal peptidoglycan-synthesizing complexes. In summary, YhcB is a conserved and conditionally essential protein that plays a role in cell division and consequently affects envelope biogenesis. Based on these findings, we propose to rename YhcB to ZapG (Z-ring-associated protein G). This study will serve as a starting point for future studies on this protein family and on how cells transit from exponential to stationary survival.

Indexed as

Bacterial ProteinsCell DivisionCrystallography, X-RayModels, MolecularPeptidoglycanProtein ConformationProteobacteriaBacterial ProteinsPeptidoglycancell division/divisomeDUF1043/envelope biosynthesis/FtsZ/FtsIprotein function and structure/RodZ/X-ray crystallography

Identifiers

PMID33895137
PMCPMC8163987
OpenAlexW3157088446

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.