Evidence map›Paper›PMID 33894778›Full record

ArticlePneumonia (Nathan Qld.)2021

Carriage of upper respiratory tract pathogens in rural communities of Sarawak, Malaysian Borneo.

Denise E Morris, Hannah McNeil, Rebecca E Hocknell, Rebecca Anderson, Andrew C Tuck, Serena Tricarico, Mohd Nor Norazmi, Victor Lim, Tan Cheng Siang, Patricia Kim Chooi Lim and 5 more

Open access · goldAbstract read
In one paragraph

Article in Pneumonia (Nathan Qld.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 2 countries.

Denise E MorrisFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK.
Hannah McNeilFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK.
Rebecca E HocknellFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK.
Rebecca AndersonFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK.
Andrew C TuckFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK.
Serena TricaricoFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK.
Mohd Nor NorazmiSchool of Health Sciences, Universiti Sains Malaysia, Kubang Kerian, Kelantan, Malaysia.
Victor LimSchool of Medicine, International Medical University, Kuala Lumpur, Malaysia.
Tan Cheng SiangFaculty of Medicine and Health Sciences, Universiti Malaysia Sarawak, Kota Samarahan, Sarawak, Malaysia.
Patricia Kim Chooi LimSchool of Medicine, International Medical University, Kuala Lumpur, Malaysia.
Chong Chun WieInstitute for Research, Development and Innovation, International Medical University, Kuala Lumpur, Malaysia.
David W ClearyFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK.
Ivan Kok Seng YapInstitute for Research, Development and Innovation, International Medical University, Kuala Lumpur, Malaysia.
Stuart C ClarkeFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK. S.C.Clarke@soton.ac.uk.
MYCarriage group
University of Southampton · GBMonash University Malaysia · MYUniversiti Malaysia Sarawak · MYUniversiti Sains Malaysia · MYUniversity Hospital Southampton NHS Foundation Trust · GBForest Department Sarawak · MY

Funding

Newton Fund 172686537
6 · The paper itself

Abstract

introductionPneumonia is a leading cause of death in Malaysia. Whilst many studies have reported the aetiology of pneumonia in Western countries, the epidemiology of pneumonia in Malaysia remains poorly understood. As carriage is a prerequisite for disease, we sought to improve our understanding of the carriage and antimicrobial resistance (AMR) of respiratory tract pathogens in Malaysia. The rural communities of Sarawak are an understudied part of the Malaysian population and were the focus of this study, allowing us to gain a better understanding of bacterial epidemiology in this population.

methodsA population-based survey of bacterial carriage was undertaken in participants of all ages from rural communities in Sarawak, Malaysia. Nasopharyngeal, nasal, mouth and oropharyngeal swabs were taken. Bacteria were isolated from each swab and identified by culture-based methods and antimicrobial susceptibility testing conducted by disk diffusion or E test.

results140 participants were recruited from five rural communities. Klebsiella pneumoniae was most commonly isolated from participants (30.0%), followed by Staphylococcus aureus (20.7%), Streptococcus pneumoniae (10.7%), Haemophilus influenzae (9.3%), Moraxella catarrhalis (6.4%), Pseudomonas aeruginosa (6.4%) and Neisseria meningitidis (5.0%). Of the 21 S. pneumoniae isolated, 33.3 and 14.3% were serotypes included in the 13 valent PCV (PCV13) and 10 valent PCV (PCV10) respectively. 33.8% of all species were resistant to at least one antibiotic, however all bacterial species except S. pneumoniae were susceptible to at least one type of antibiotic.

conclusionTo our knowledge, this is the first bacterial carriage study undertaken in East Malaysia. We provide valuable and timely data regarding the epidemiology and AMR of respiratory pathogens commonly associated with pneumonia. Further surveillance in Malaysia is necessary to monitor changes in the carriage prevalence of upper respiratory tract pathogens and the emergence of AMR, particularly as PCV is added to the National Immunisation Programme (NIP).

Indexed as

AMRCarriageMalaysiaPathogenPneumoniaRespiratory

Identifiers

PMID33894778
PMCPMC8070298
OpenAlexW3158790568

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.