Evidence map›Paper›PMID 33894201›Full record

ArticleThe Journal of biological chemistry

Intrinsically disordered substrates dictate SPOP subnuclear localization and ubiquitination activity.

Emery T Usher, Nafiseh Sabri, Roman Rohac, Amie K Boal, Tanja Mittag, Scott A Showalter

Open access · goldAbstract read
In one paragraph

Article in The Journal of biological chemistry. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Emery T UsherDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania, USA.
Nafiseh SabriDepartment of Structural Biology, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Roman RohacDepartment of Chemistry, Pennsylvania State University, University Park, Pennsylvania, USA.
Amie K BoalDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania, USA; Department of Chemistry, Pennsylvania State University, University Park, Pennsylvania, USA.
Tanja MittagDepartment of Structural Biology, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Scott A ShowalterDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania, USA; Department of Chemistry, Pennsylvania State University, University Park, Pennsylvania, USA. Electronic address: sas76@psu.edu.
Pennsylvania State University · USSt. Jude Children's Research Hospital · US

Funding

Mapping the Structural Basis for Mechanistic Diversity in Metalloenzyme SuperfamiliesR35GM119707 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI Amie K Boal · 2016 to 2026
$5.0M
The role of weak multivalent interactions and phase separation in SPOP tumor suppressor functionR01GM112846 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI MITTAG, TANJA · 2015 to 2023
$3.0M
High-Speed High-Sensitivity Detector for X-ray Micro-Crystallography at GM/CA@APSS10OD012289 · OD · UNIVERSITY OF CHICAGO · PI FISCHETTI, ROBERT F. · 2014 to 2014
$2.0M
Structure and Mechanism of Transcription Factors in Pancreatic Beta CellsR01DK121509 · NIDDK · PENNSYLVANIA STATE UNIVERSITY, THE · PI SHOWALTER, SCOTT A · 2019 to 2021
$1.2M
The molecular mechanisms of Pdx1 destabilization by SPOPF31DK124047 · NIDDK · PENNSYLVANIA STATE UNIVERSITY, THE · PI USHER, EMERY THOMAS · 2019 to 2022
$101k
Biophysical Characterization of PDX1 interactions with DNA and other transcriptioF31GM101936 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI BASTIDAS, MONIQUE · 2012 to 2014
$95k
NIDDK NIH HHS F31 DK124047NIDDK NIH HHS R01 DK121509NIGMS NIH HHS F31 GM101936NIGMS NIH HHS R01 GM112846NIGMS NIH HHS R35 GM119707NIH HHS S10 OD012289
6 · The paper itself

Abstract

Speckle-type POZ protein (SPOP) is a ubiquitin ligase adaptor that binds substrate proteins and facilitates their proteasomal degradation. Most SPOP substrates present multiple SPOP-binding (SB) motifs and undergo liquid-liquid phase separation with SPOP. Pancreatic and duodenal homeobox 1 (Pdx1), an insulin transcription factor, is downregulated by interaction with SPOP. Unlike other substrates, only one SB motif has previously been reported within the Pdx1 C-terminal intrinsically disordered region (Pdx1-C). Given this difference, we aimed to determine the specific mode of interaction of Pdx1 with SPOP and how it is similar or different to that of other SPOP substrates. Here, we identify a second SB motif in Pdx1-C, but still find that the resulting moderate valency is insufficient to support phase separation with SPOP in cells. Although Pdx1 does not phase separate with SPOP, Pdx1 and SPOP interaction prompts SPOP relocalization from nuclear speckles to the diffuse nucleoplasm. Accordingly, we find that SPOP-mediated ubiquitination activity of Pdx1 occurs in the nucleoplasm and that highly efficient Pdx1 turnover requires both SB motifs. Our results suggest that the subnuclear localization of SPOP-substrate interactions and substrate ubiquitination may be directed by the properties of the substrate itself.

Indexed as

UbiquitinationAmino Acid MotifsHomeodomain ProteinsHumansModels, MolecularNuclear ProteinsProtein BindingProtein TransportRepressor ProteinsTrans-ActivatorsHomeodomain ProteinsNuclear Proteinspancreatic and duodenal homeobox 1 proteinRepressor ProteinsSPOP protein, humanTrans-ActivatorsdiabetesmultivalencyPdx1SPOPstructureubiquitination

Identifiers

PMID33894201
PMCPMC8138767
OpenAlexW3156632669

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.