Evidence map›Paper›PMID 33893555›Full record

ArticleMetabolomics : Official journal of the Metabolomic Society2021

Time-course analysis of Streptococcus sanguinis after manganese depletion reveals changes in glycolytic and nucleic acid metabolites.

Tanya Puccio, Biswapriya B Misra, Todd Kitten

Open access · hybridAbstract read
In one paragraph

Article in Metabolomics : Official journal of the Metabolomic Society, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Tanya PuccioPhilips Institute for Oral Health Research, Virginia Commonwealth University School of Dentistry, Richmond, VA, 23298, USA.ORCID 0000-0002-0223-4885
Biswapriya B MisraDepartment of Internal Medicine, Section on Molecular Medicine, Wake Forest School of Medicine, Medical Center Boulevard, Winston-Salem, NC, 27157, USA.ORCID 0000-0003-2589-6539
Todd KittenPhilips Institute for Oral Health Research, Virginia Commonwealth University School of Dentistry, Richmond, VA, 23298, USA. tkitten@vcu.edu.ORCID 0000-0001-6097-7583
Virginia Commonwealth University · USWake Forest University · US

Funding

Role of metal transport in Streptococcus sanguinis virulence and competitivenessR01AI114926 · NIAID · VIRGINIA COMMONWEALTH UNIVERSITY · PI KITTEN, TODD O. · 2015 to 2019
$1.9M
Characterization of a putative metal transport protein in Streptococcus sanguinisF31DE028468 · NIDCR · VIRGINIA COMMONWEALTH UNIVERSITY · PI PUCCIO, TANYA · 2019 to 2020
$77k
NIAID NIH HHS R01 AI114926NIDCR NIH HHS F31 DE028468
6 · The paper itself

Abstract

introductionManganese is important for the endocarditis pathogen Streptococcus sanguinis. Little is known about why manganese is required for virulence or how it impacts the metabolome of streptococci.

objectivesWe applied untargeted metabolomics to cells and media to understand temporal changes resulting from manganese depletion.

methodsEDTA was added to a S. sanguinis manganese-transporter mutant in aerobic fermentor conditions. Cell and media samples were collected pre- and post-EDTA treatment. Metabolomics data were generated using positive and negative modes of data acquisition on an LC-MS/MS system. Data were subjected to statistical processing using MetaboAnalyst and time-course analysis using Short Time series Expression Miner (STEM). Recombinant enzymes were assayed for metal dependence.

resultsWe observed quantitative changes in 534 and 422 metabolites in cells and media, respectively, after EDTA addition. The 173 cellular metabolites identified as significantly different indicated enrichment of purine and pyrimidine metabolism. Further multivariate analysis revealed that the top 15 cellular metabolites belonged primarily to lipids and redox metabolites. The STEM analysis revealed global changes in cells and media in comparable metabolic pathways. Glycolytic intermediates such as fructose-1,6-bisphosphate increased, suggesting that enzymes that utilize them require manganese for activity or expression. Recombinant enzymes were confirmed to utilize manganese in vitro. Nucleosides accumulated, possibly due to a blockage in conversion to nucleobases resulting from manganese-dependent regulation.

conclusionDifferential analysis of metabolites revealed the activation of a number of metabolic pathways in response to manganese depletion, many of which are connected to carbon catabolite repression.

Indexed as

Streptococcus sanguisChromatography, LiquidEdetic AcidIonsManganeseNucleic AcidsTandem Mass SpectrometryEdetic AcidIonsManganeseNucleic AcidsEndocarditisManganeseMetabolomicsMultivariateTime-course

Identifiers

PMID33893555
PMCPMC8064989
OpenAlexW3154147516

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.