Evidence map›Paper›PMID 33893332›Full record

ArticleScientific reports2021

Nine residues in HLA-DQ molecules determine with susceptibility and resistance to type 1 diabetes among young children in Sweden.

Lue Ping Zhao, George K Papadopoulos, Antonis K Moustakas, George P Bondinas, Annelie Carlsson, Helena Elding Larsson, Johnny Ludvigsson, Claude Marcus, Martina Persson, Ulf Samuelsson and 4 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 3 countries.

Lue Ping ZhaoPublic Health Sciences Division, Fred Hutchinson Cancer Research Center, 1100 Fairview Ave NE, Seattle, WA, 98109, USA. lzhao@fredhutch.org.
George K Papadopoulos *Laboratory of Biophysics, Biochemistry, Biomaterials and Bioprocessing, Department of Agriculture, Faculty of Agricultural Technology, University of Ioannina, Ioannina, Greece.
Antonis K MoustakasDepartment of Food Science and Technology, Faculty of Environmental Sciences, Ionian University, GR26100, Argostoli, Cephalonia, Greece.
George P BondinasLaboratory of Biophysics, Biochemistry, Biomaterials and Bioprocessing, Department of Agriculture, Faculty of Agricultural Technology, University of Ioannina, Ioannina, Greece.
Annelie CarlssonDepartment of Pediatrics, Lund University, Lund, Sweden.
Helena Elding LarssonDepartment of Clinical Sciences, Lund University CRC, Skåne University Hospital, Malmö, Sweden.
Johnny LudvigssonDepartment of Clinical and Experimental Medicine, Crown Princess Victoria Children´S Hospital, Region Östergötland and Div of Pediatrics, Linköping University, Linköping, Sweden.
Claude MarcusDepartment of Clinical Science and Education Karolinska Institutet and Institution of Medicine, Clinical Epidemiology, Karolinska Institutet, Stockholm, Sweden.
Martina PerssonDepartment of Medicine, Clinical Epidemiological Unit, Karolinska Institutet, Stockholm, Sweden.
Ulf SamuelssonDepartment of Clinical and Experimental Medicine, Crown Princess Victoria Children´S Hospital, Region Östergötland and Div of Pediatrics, Linköping University, Linköping, Sweden.
Ruihan WangClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Chul-Woo PyoClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Daniel E GeraghtyClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Åke LernmarkDepartment of Clinical Sciences, Lund University CRC, Skåne University Hospital, Malmö, Sweden.
Fred Hutch Cancer Center · USKarolinska Institutet · SELinköping University Hospital · SELund University · SEUniversity of Ioannina · GRIonian University · GRSkåne University Hospital · SE

Funding

PARACRINE FEEDBACK BY PANCREATIC DELTA CELLS TO CONTROL GLUCAGON AND INSULIN RELEASE AND MANAGE DIABETESR01DK110276 · NIDDK · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Mark O. Huising · 2017 to 2026
$3.9M
NIDDK NIH HHS R01 DK110276
6 · The paper itself

Abstract

HLA-DQ molecules account over 50% genetic risk of type 1 diabetes (T1D), but little is known about associated residues. Through next generation targeted sequencing technology and deep learning of DQ residue sequences, the aim was to uncover critical residues and their motifs associated with T1D. Our analysis uncovered (αa1, α44, α157, α196) and (β9, β30, β57, β70, β135) on the HLA-DQ molecule. Their motifs captured all known susceptibility and resistant T1D associations. Three motifs, "DCAA-YSARD" (OR = 2.10, p = 1.96*10

Indexed as

Amino AcidsCase-Control StudiesChildChild, PreschoolDiabetes Mellitus, Type 1Disease SusceptibilityGene FrequencyHaplotypesHLA-DQ AntigensHumansRisk FactorsSwedenAmino AcidsHLA-DQ Antigens

Identifiers

PMID33893332
PMCPMC8065060
OpenAlexW3153607478

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.