Evidence map›Paper›PMID 33893305›Full record

ArticleNature communications2021

Kidney intercalated cells are phagocytic and acidify internalized uropathogenic Escherichia coli.

Vijay Saxena, Hongyu Gao, Samuel Arregui, Amy Zollman, Malgorzata Maria Kamocka, Xiaoling Xuei, Patrick McGuire, Michael Hutchens, Takashi Hato, David S Hains and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 53 citations in OpenAlex.

  1. Urinary tract infections in children.Nature reviews. Urology · 2026
    Review
  2. Article
  3. Article
  4. eLife · 2026
    Article
  5. Review
  6. Article
  7. Article
  8. Immunomodulatory Functions of Intercalated Cells in Kidney Autoimmunity.bioRxiv : the preprint server for biology · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. The immune mechanisms of the urinary tract against infections.Frontiers in cellular and infection microbiology · 2025
    Review
  18. Article
  19. Insulin receptor orchestrates kidney antibacterial defenses.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  20. Kidney Disease Modeling with Organoids and Organs-on-Chips.Annual review of biomedical engineering · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Vijay Saxena *Indiana University School of Medicine, Department of Pediatrics, Division of Nephrology, Indianapolis, IN, USA. visaxena@iu.edu.ORCID http://orcid.org/0000-0002-6696-0472
Hongyu GaoIndiana University School of Medicine, Department of Medical & Molecular Genetics, Indianapolis, IN, USA.
Samuel ArreguiIndiana University School of Medicine, Department of Pediatrics, Division of Nephrology, Indianapolis, IN, USA.ORCID http://orcid.org/0000-0001-5007-5412
Amy ZollmanIndiana University School of Medicine, Department of Medicine, Division of Nephrology, Indianapolis, IN, USA.
Malgorzata Maria KamockaIndiana University School of Medicine, Department of Medicine, Division of Nephrology, Indianapolis, IN, USA.
Xiaoling XueiIndiana University School of Medicine, Department of Medical & Molecular Genetics, Indianapolis, IN, USA.
Patrick McGuireIndiana University School of Medicine, Department of Medical & Molecular Genetics, Indianapolis, IN, USA.
Michael HutchensOregon Health and Science University, Department of Anesthesiology & Perioperative Medicine, Portland, OR, USA.ORCID http://orcid.org/0000-0001-8583-1812
Takashi HatoIndiana University School of Medicine, Department of Medicine, Division of Nephrology, Indianapolis, IN, USA.ORCID http://orcid.org/0000-0002-0446-6575
David S Hains *Indiana University School of Medicine, Department of Pediatrics, Division of Nephrology, Indianapolis, IN, USA.ORCID http://orcid.org/0000-0001-6511-9561
Andrew L Schwaderer *Indiana University School of Medicine, Department of Pediatrics, Division of Nephrology, Indianapolis, IN, USA. schwadea@iu.edu.ORCID http://orcid.org/0000-0003-0560-4666
Indiana University School of MedicineOregon Health & Science University · US

Funding

Quality Assurance and Quality Control Project Management: Improving Submissions and Study Conduct in the Human Subjects Research Prior Approval ProcessUL1TR002529 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI MOE, SHARON M, WIEHE, SARAH ELIZABETH · 2018 to 2022
$27.2M
PROBE DELIVERY COREP30DK079312 · NIDDK · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI DAGHER, PIERRE C · 2007 to 2021
$17.1M
Genetic Regulation, Tubular Processing and Clinical Relevance of Collecting Duct alpha-Defensins 1-3R01DK117934 · NIDDK · INDIANA UNIVERSITY INDIANAPOLIS · PI CINES, DOUGLAS BROCK, HAINS, DAVID SULLIVAN · 2018 to 2021
$2.3M
The role of antiviral programs in bacterial sepsisR01AI148282 · NIAID · INDIANA UNIVERSITY INDIANAPOLIS · PI HATO, TAKASHI · 2020 to 2024
$2.0M
The interface between critical acid-base mediators and the renal bacterial defenseR01DK106286 · NIDDK · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI HAINS, DAVID SULLIVAN, SCHWADERER, ANDREW LAWRENCE · 2015 to 2018
$1.6M
Modulating purine metabolism to treat kidney injury in sepsis.K08DK113223 · NIDDK · INDIANA UNIVERSITY INDIANAPOLIS · PI HATO, TAKASHI · 2017 to 2021
$757k
Protective pathways in sepsis-induced renal injuryI01BX002901 · VA · RLR VA MEDICAL CENTER · PI Takashi Hato · 2016 to 2026
–
BLRD VA I01 BX002901BLRD VA I01 BX004288NCATS NIH HHS UL1 TR002529NIAID NIH HHS R01 AI148282NIDDK NIH HHS K08 DK113223NIDDK NIH HHS P30 DK079312NIDDK NIH HHS R01 DK106286NIDDK NIH HHS R01 DK117934
6 · The paper itself

Abstract

Kidney intercalated cells are involved in acid-base homeostasis via vacuolar ATPase expression. Here we report six human intercalated cell subtypes, including hybrid principal-intercalated cells identified from single cell transcriptomics. Phagosome maturation is a biological process that increases in biological pathway analysis rank following exposure to uropathogenic Escherichia coli in two of the intercalated cell subtypes. Real time confocal microscopy visualization of murine renal tubules perfused with green fluorescent protein expressing Escherichia coli or pHrodo Green E. coli BioParticles demonstrates that intercalated cells actively phagocytose bacteria then acidify phagolysosomes. Additionally, intercalated cells have increased vacuolar ATPase expression following in vivo experimental UTI. Taken together, intercalated cells exhibit a transcriptional response conducive to the kidney's defense, engulf bacteria and acidify the internalized bacteria. Intercalated cells represent an epithelial cell with characteristics of professional phagocytes like macrophages.

Indexed as

AcidsAnimalsCells, CulturedEpithelial CellsGene Expression ProfilingHumansKidneyKidney Tubules, CollectingMiceMice, Inbred C57BLMice, TransgenicMicroscopy, ConfocalPhagocytesSingle-Cell AnalysisUropathogenic Escherichia coliVacuolar Proton-Translocating ATPasesAcidsVacuolar Proton-Translocating ATPases

Identifiers

PMID33893305
PMCPMC8065053
OpenAlexW3156870519

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.