Evidence map›Paper›PMID 33893285›Full record

ArticleNature communications2021

The impact of non-additive genetic associations on age-related complex diseases.

Marta Guindo-Martínez, Ramon Amela, Silvia Bonàs-Guarch, Montserrat Puiggròs, Cecilia Salvoro, Irene Miguel-Escalada, Caitlin E Carey, Joanne B Cole, Sina Rüeger, Elizabeth Atkinson and 12 more

Abstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers, 6 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed, 6 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 6 syntheses or guidelines pooled it.

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  3. X-linked genetic associations in sporadic thoracic aortic dissection.American journal of medical genetics. Part A · 2024
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22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Marta Guindo-Martínez *Barcelona Supercomputing Center (BSC), Barcelona, Spain.ORCID 0000-0002-8099-9170
Ramon Amela *Barcelona Supercomputing Center (BSC), Barcelona, Spain.
Silvia Bonàs-GuarchBarcelona Supercomputing Center (BSC), Barcelona, Spain.ORCID 0000-0002-2085-7488
Montserrat PuiggròsBarcelona Supercomputing Center (BSC), Barcelona, Spain.ORCID 0000-0001-5034-7924
Cecilia SalvoroBarcelona Supercomputing Center (BSC), Barcelona, Spain.ORCID 0000-0003-1070-3220
Irene Miguel-EscaladaBarcelona Supercomputing Center (BSC), Barcelona, Spain.ORCID 0000-0003-3461-6404
Caitlin E CareyStanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Joanne B ColePrograms in Metabolism and Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID 0000-0001-9520-2788
Sina RüegerInstitute for Molecular Medicine Finland, FIMM, HiLIFE, University of Helsinki, Helsinki, Finland.
Elizabeth AtkinsonStanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID 0000-0002-6308-776X
Aaron LeongHarvard Medical School, Boston, MA, USA.
Friman SanchezBarcelona Supercomputing Center (BSC), Barcelona, Spain.
Cristian Ramon-CortesBarcelona Supercomputing Center (BSC), Barcelona, Spain.ORCID 0000-0003-4170-818X
Jorge EjarqueBarcelona Supercomputing Center (BSC), Barcelona, Spain.ORCID 0000-0003-4725-5097
Duncan S PalmerStanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Mitja KurkiInstitute for Molecular Medicine Finland, FIMM, HiLIFE, University of Helsinki, Helsinki, Finland.
FinnGen Consortium
Krishna AragamProgram in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Jose C FlorezPrograms in Metabolism and Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Rosa M BadiaBarcelona Supercomputing Center (BSC), Barcelona, Spain.ORCID 0000-0003-2941-5499
Josep M MercaderBarcelona Supercomputing Center (BSC), Barcelona, Spain. mercader@broadinstitute.org.ORCID 0000-0001-8494-3660
David TorrentsBarcelona Supercomputing Center (BSC), Barcelona, Spain. david.torrents@bsc.es.

Funding

Training Program in Psychiatric Genetics and Translational ResearchT32MH017119 · NIMH · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI KARESTAN C KOENEN, Jukka-Pekka Onnela · 1985 to 2026
$8.9M
Mentoring Investigators on the Clinical Translation of Genetic Discoveries in Type 2 DiabetesK24DK110550 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI FLOREZ, JOSE CARLOS · 2016 to 2020
$812k
A framework enabling the genomic analysis of psychiatric traits across admixed populations.K01MH121659 · NIMH · MASSACHUSETTS GENERAL HOSPITAL · PI ATKINSON, ELIZABETH GRACE · 2019 to 2022
$719k
NIDDK NIH HHS K24 DK110550NIMH NIH HHS K01 MH121659NIMH NIH HHS T32 MH017119Wellcome TrustWellcome Trust WT091310
6 · The paper itself

Abstract

Genome-wide association studies (GWAS) are not fully comprehensive, as current strategies typically test only the additive model, exclude the X chromosome, and use only one reference panel for genotype imputation. We implement an extensive GWAS strategy, GUIDANCE, which improves genotype imputation by using multiple reference panels and includes the analysis of the X chromosome and non-additive models to test for association. We apply this methodology to 62,281 subjects across 22 age-related diseases and identify 94 genome-wide associated loci, including 26 previously unreported. Moreover, we observe that 27.7% of the 94 loci are missed if we use standard imputation strategies with a single reference panel, such as HRC, and only test the additive model. Among the new findings, we identify three novel low-frequency recessive variants with odds ratios larger than 4, which need at least a three-fold larger sample size to be detected under the additive model. This study highlights the benefits of applying innovative strategies to better uncover the genetic architecture of complex diseases.

Indexed as

AgingAge FactorsDiseaseGene FrequencyGenetic Predisposition to DiseaseGenome, HumanGenome-Wide Association StudyGenotypeHaplotypesHumansPhenotypePolymorphism, Single Nucleotide

Identifiers

PMID33893285
PMCPMC8065056

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.