Evidence map›Paper›PMID 33893150›Full record

ArticleCancer discovery2021

Transcriptional Silencing of

Zhaolin Yang, Xiaoli S Wu, Yiliang Wei, Sofya A Polyanskaya, Shruti V Iyer, Moonjung Jung, Francis P Lach, Emmalee R Adelman, Olaf Klingbeil, Joseph P Milazzo and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer discovery, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 4 institutions in 1 country.

Zhaolin YangCold Spring Harbor Laboratory, Cold Spring Harbor, New York.ORCID 0000-0002-7857-9724
Xiaoli S WuCold Spring Harbor Laboratory, Cold Spring Harbor, New York.
Yiliang WeiCold Spring Harbor Laboratory, Cold Spring Harbor, New York.ORCID 0000-0001-8956-2955
Sofya A PolyanskayaCold Spring Harbor Laboratory, Cold Spring Harbor, New York.ORCID 0000-0003-3664-3967
Shruti V IyerCold Spring Harbor Laboratory, Cold Spring Harbor, New York.ORCID 0000-0002-4351-9975
Moonjung JungLaboratory of Genome Maintenance, The Rockefeller University, New York, New York.ORCID 0000-0002-1364-1814
Francis P LachLaboratory of Genome Maintenance, The Rockefeller University, New York, New York.ORCID 0000-0003-3708-7122
Emmalee R AdelmanSylvester Comprehensive Cancer Center, Miller School of Medicine, University of Miami, Miami, Florida.
Olaf KlingbeilCold Spring Harbor Laboratory, Cold Spring Harbor, New York.
Joseph P MilazzoCold Spring Harbor Laboratory, Cold Spring Harbor, New York.
Melissa KramerCold Spring Harbor Laboratory, Cold Spring Harbor, New York.
Osama E DemerdashCold Spring Harbor Laboratory, Cold Spring Harbor, New York.
Kenneth ChangCold Spring Harbor Laboratory, Cold Spring Harbor, New York.
Sara GoodwinCold Spring Harbor Laboratory, Cold Spring Harbor, New York.
Emily HodgesDepartment of Biochemistry and Vanderbilt Genetics Institute, Vanderbilt University School of Medicine, Nashville, Tennessee.
W Richard McCombieCold Spring Harbor Laboratory, Cold Spring Harbor, New York.
Maria E FigueroaSylvester Comprehensive Cancer Center, Miller School of Medicine, University of Miami, Miami, Florida.
Agata SmogorzewskaLaboratory of Genome Maintenance, The Rockefeller University, New York, New York.ORCID 0000-0001-6285-1562
Christopher R VakocCold Spring Harbor Laboratory, Cold Spring Harbor, New York. vakoc@cshl.edu.
Cold Spring Harbor Laboratory · USRockefeller University · USUniversity of Miami · USVanderbilt University · US

Funding

Single-Cell Biology Shared ResourceP30CA045508 · NCI · COLD SPRING HARBOR LABORATORY · PI John Edward Moses · 1987 to 2026
$118.9M
VIRAL TRANSACTIVATIONP01CA013106 · NCI · COLD SPRING HARBOR LABORATORY · PI Christopher Vakoc · 1985 to 2026
$116.8M
BET bromodomain inhibition as targeted therapy in acute myeloid leukemiaR01CA174793 · NCI · COLD SPRING HARBOR LABORATORY · PI VAKOC, CHRISTOPHER · 2013 to 2023
$5.5M
Functions of human RAD51 and its paralogs during DNA interstrand crosslink repairR01CA204127 · NCI · ROCKEFELLER UNIVERSITY · PI SMOGORZEWSKA, AGATA · 2017 to 2021
$2.0M
Cancer Epigenetics Training ProgramT32CA217835 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI FIGUEROA, MARIA EUGENIA, MOREY, LLUIS · 2018 to 2022
$1.3M
Novel sources of endogenous DNA damage in hematopoietic stem progenitor cellsK99HL150628 · NHLBI · ROCKEFELLER UNIVERSITY · PI JUNG, MOONJUNG · 2020 to 2024
$1.2M
The Development and Optimization of Long-Read Sequencing Applications to Cancer Genomics in a Core SettingR50CA243890 · NCI · COLD SPRING HARBOR LABORATORY · PI GOODWIN, SARA · 2019 to 2025
$920k
NCI NIH HHS P01 CA013106NCI NIH HHS P30 CA045508NCI NIH HHS R01 CA174793NCI NIH HHS R01 CA204127NCI NIH HHS R50 CA243890NCI NIH HHS T32 CA217835NHLBI NIH HHS K99 HL150628
6 · The paper itself

Abstract

Hundreds of genes become aberrantly silenced in acute myeloid leukemia (AML), with most of these epigenetic changes being of unknown functional consequence. Here, we demonstrate how gene silencing can lead to an acquired dependency on the DNA repair machinery in AML. We make this observation by profiling the essentiality of the ubiquitination machinery in cancer cell lines using domain-focused CRISPR screening, which revealed Fanconi anemia (FA) proteins UBE2T and FANCL as unique dependencies in AML. We demonstrate that these dependencies are due to a synthetic lethal interaction between FA proteins and aldehyde dehydrogenase 2 (ALDH2), which function in parallel pathways to counteract the genotoxicity of endogenous aldehydes. We show DNA hypermethylation and silencing of

Indexed as

Aldehyde Dehydrogenase, MitochondrialCell Line, TumorFanconi Anemia Complementation Group ProteinsHumansLeukemia, Myeloid, AcuteUbiquitinationAldehyde Dehydrogenase, MitochondrialALDH2 protein, humanFanconi Anemia Complementation Group Proteins

Identifiers

PMID33893150
PMCPMC8419016
OpenAlexW3155364700

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.