Evidence map›Paper›PMID 33893097›Full record

ArticleScience advances2021

Spatially resolved cell polarity proteomics of a human epiblast model.

Sicong Wang, Chien-Wei Lin, Amber E Carleton, Chari L Cortez, Craig Johnson, Linnea E Taniguchi, Nikola Sekulovski, Ryan F Townshend, Venkatesha Basrur, Alexey I Nesvizhskii and 5 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
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  8. Primate amnion development.Development (Cambridge, England) · 2024
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Human epiblast lumenogenesis: From a cell aggregate to a lumenal cyst.Seminars in cell & developmental biology · 2022
    Review
  15. Review
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 2 countries.

Sicong WangDepartment of Mechanical Engineering, University of Michigan, Ann Arbor, MI 48109, USA.ORCID 0000-0002-8444-6231
Chien-Wei LinDivision of Biostatistics, Medical College of Wisconsin, Milwaukee, WI 53226, USA.ORCID 0000-0003-4023-7339
Amber E CarletonDepartment of Cell Biology, Neurobiology and Anatomy, Medical College of Wisconsin, Milwaukee, WI 53226, USA.ORCID 0000-0002-7347-6945
Chari L CortezDepartment of Cell and Developmental Biology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.ORCID 0000-0003-4687-1410
Craig JohnsonDepartment of Cell and Developmental Biology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.ORCID 0000-0003-3955-7394
Linnea E TaniguchiDepartment of Cell Biology, Neurobiology and Anatomy, Medical College of Wisconsin, Milwaukee, WI 53226, USA.
Nikola SekulovskiDepartment of Cell Biology, Neurobiology and Anatomy, Medical College of Wisconsin, Milwaukee, WI 53226, USA.
Ryan F TownshendDepartment of Cell and Developmental Biology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.ORCID 0000-0002-2040-936X
Venkatesha BasrurDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.ORCID 0000-0002-0853-9655
Alexey I NesvizhskiiDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.ORCID 0000-0002-2806-7819
Peng ZouCollege of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China.ORCID 0000-0002-9798-5242
Jianping FuDepartment of Mechanical Engineering, University of Michigan, Ann Arbor, MI 48109, USA. ktaniguchi@mcw.edu mcduncan@med.umich.edu dgumucio@med.umich.edu jpfu@umich.edu.ORCID 0000-0001-9629-6739
Deborah L GumucioDepartment of Cell and Developmental Biology, University of Michigan Medical School, Ann Arbor, MI 48109, USA. ktaniguchi@mcw.edu mcduncan@med.umich.edu dgumucio@med.umich.edu jpfu@umich.edu.ORCID 0000-0001-8883-383X
Mara C DuncanDepartment of Cell and Developmental Biology, University of Michigan Medical School, Ann Arbor, MI 48109, USA. ktaniguchi@mcw.edu mcduncan@med.umich.edu dgumucio@med.umich.edu jpfu@umich.edu.ORCID 0000-0002-2383-0109
Kenichiro TaniguchiDepartment of Cell Biology, Neurobiology and Anatomy, Medical College of Wisconsin, Milwaukee, WI 53226, USA. ktaniguchi@mcw.edu mcduncan@med.umich.edu dgumucio@med.umich.edu jpfu@umich.edu.ORCID 0000-0002-4531-7197
University of Michigan · USMedical College of Wisconsin · USPeking University · CN

Funding

Structural Biology of Mitochondrial FissionR01GM067180 · NIGMS · MEDICAL COLLEGE OF WISCONSIN · PI HILL, R BLAKE · 2004 to 2022
$6.0M
COMPUTATIONAL TOOLS FOR MASS SPECTROMETRY-BASED INTERACTOME DATAR01GM094231 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Alexey I Nesvizhskii · 2010 to 2026
$5.4M
Investigation into protein quality control pathways in Dictyostetlium discoideumR35GM119544 · NIGMS · MEDICAL COLLEGE OF WISCONSIN · PI Kenneth Matthew Scaglione · 2016 to 2026
$4.2M
Morphogenesis of the fetal intestinal epitheliumR01DK089933 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GUMUCIO, DEBORAH L. · 2011 to 2019
$3.6M
Molecular regulators of human amniogenesisR01HD098231 · NICHD · MEDICAL COLLEGE OF WISCONSIN · PI Kenichiro Taniguchi · 2019 to 2026
$3.3M
Mechanism of apicosome-driven lumen formation during human and mouse embryogenesisR01HD102496 · NICHD · MEDICAL COLLEGE OF WISCONSIN · PI TANIGUCHI, KENICHIRO · 2020 to 2024
$1.9M
Subversion of lysosomal trafficking by HHV-7 U21R01GM120735 · NIGMS · MEDICAL COLLEGE OF WISCONSIN · PI HUDSON, AMY W · 2016 to 2019
$1.4M
Characterizing new proteins that determine AP-1 recruitment and distributionR01GM129255 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DUNCAN, MARA C · 2019 to 2022
$1.2M
NICHD NIH HHS R01 HD098231NICHD NIH HHS R01 HD102496NIDDK NIH HHS R01 DK089933NIGMS NIH HHS R01 GM067180NIGMS NIH HHS R01 GM094231NIGMS NIH HHS R01 GM120735NIGMS NIH HHS R01 GM129255NIGMS NIH HHS R35 GM119544
6 · The paper itself

Abstract

Critical early steps in human embryonic development include polarization of the inner cell mass, followed by formation of an expanded lumen that will become the epiblast cavity. Recently described three-dimensional (3D) human pluripotent stem cell-derived cyst (hPSC-cyst) structures can replicate these processes. To gain mechanistic insights into the poorly understood machinery involved in epiblast cavity formation, we interrogated the proteomes of apical and basolateral membrane territories in 3D human hPSC-cysts. APEX2-based proximity bioinylation, followed by quantitative mass spectrometry, revealed a variety of proteins without previous annotation to specific membrane subdomains. Functional experiments validated the requirement for several apically enriched proteins in cyst morphogenesis. In particular, we found a key role for the AP-1 clathrin adaptor complex in expanding the apical membrane domains during lumen establishment. These findings highlight the robust power of this proximity labeling approach for discovering novel regulators of epithelial morphogenesis in 3D stem cell-based models.

Identifiers

PMID33893097
PMCPMC8064645
OpenAlexW3157013372

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.