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ArticleAntimicrobial resistance and infection control2021

Genetic mechanisms and correlated risk factors of antimicrobial-resistant ESKAPEE pathogens isolated in a tertiary hospital in Malaysia.

Soo Tein Ngoi, Chun Wie Chong, Sasheela Sri La Sri Ponnampalavanar, Soo Nee Tang, Nuryana Idris, Kartini Abdul Jabar, Michael J Gregory, Tupur Husain, Cindy Shuan Ju Teh

Open access · goldAbstract read
In one paragraph

Article in Antimicrobial resistance and infection control, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 2 pooled it
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 2 syntheses or guidelines pooled it, 24 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  6. Comprehensive Genomic Analysis ofAntibiotics (Basel, Switzerland) · 2025
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  8. Whole-genome sequencing ofMicrobial genomics · 2025
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  15. Review
  16. The Intriguing Carbapenemases ofThe Yale journal of biology and medicine · 2022
    Review
  17. Article
  18. Investigating the OXA Variants of ESKAPE Pathogens.Antibiotics (Basel, Switzerland) · 2021
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Soo Tein NgoiDepartment of Medical Microbiology, Faculty of Medicine, Universiti Malaya, 50603, Kuala Lumpur, Malaysia.
Chun Wie ChongSchool of Pharmacy, Monash University Malaysia, 47500, Bandar Sunway, Selangor, Malaysia.
Sasheela Sri La Sri PonnampalavanarDepartment of Medicine, Faculty of Medicine, Universiti Malaya, 50603, Kuala Lumpur, Malaysia.
Soo Nee TangDepartment of Medical Microbiology, Faculty of Medicine, Universiti Malaya, 50603, Kuala Lumpur, Malaysia.
Nuryana IdrisDepartment of Medical Microbiology, Faculty of Medicine, Universiti Malaya, 50603, Kuala Lumpur, Malaysia.
Kartini Abdul JabarDepartment of Medical Microbiology, Faculty of Medicine, Universiti Malaya, 50603, Kuala Lumpur, Malaysia.
Michael J GregoryUnited States Naval Medical Research Unit Two (NAMRU-2), Phnom Penh, Cambodia.
Tupur HusainUnited States Naval Medical Research Unit Two (NAMRU-2), Phnom Penh, Cambodia.
Cindy Shuan Ju TehDepartment of Medical Microbiology, Faculty of Medicine, Universiti Malaya, 50603, Kuala Lumpur, Malaysia. cindysjteh@um.edu.my.
University of Malaya · MYMonash University Malaysia · MY

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundKnowledge on the epidemiology, genotypic and phenotypic features of antimicrobial-resistant (AMR) ESKAPEE pathogens (Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas aeruginosa, Enterobacter spp., and Escherichia coli) and their association with hospital-acquired infections (HAIs) are limited in Malaysia. Therefore, we evaluated the AMR features and resistance mechanisms of the ESKAPEE pathogens collected in a tertiary hospital located in the capital of Malaysia.

methodsA total of 378 AMR-ESKAPEE strains were obtained based on convenience sampling over a nine-month study period (2019-2020). All strains were subjected to disk diffusion and broth microdilution assays to determine the antimicrobial susceptibility profiles. Polymerase chain reaction (PCR) and DNA sequence analyses were performed to determine the AMR genes profiles of the non-susceptible strains. Chi-square test and logistic regression analyses were used to correlate the AMR profiles and clinical data to determine the risk factors associated with HAIs.

resultsHigh rates of multidrug resistance (MDR) were observed in A. baumannii, K. pneumoniae, E. coli, and S. aureus (69-89%). All organisms except E. coli were frequently associated with HAIs (61-94%). Non-susceptibility to the last-resort drugs vancomycin (in Enterococcus spp. and S. aureus), carbapenems (in A. baumannii, P. aeruginosa, and Enterobacteriaceae), and colistin (in Enterobacteriaceae) were observed. Both A. baumannii and K. pneumoniae harbored a wide array of extended-spectrum β-lactamase genes (bla

conclusionOverall, our findings may provide valuable insight into the microbial resistance pattern and the risk factors of ESKAPEE-associated HAIs in a tertiary hospital located in central Peninsular Malaysia. The data obtained in this study may contribute to informing better hospital infection control in this region.

Indexed as

Drug Resistance, Multiple, BacterialAcinetobacter baumanniiAdolescentAdultAnti-Bacterial AgentsBacterial Proteinsbeta-LactamasesCross InfectionDNA GyraseEnterococcus faeciumEscherichia coliFemaleGenotypeHumansKlebsiella pneumoniaeMalaysiaAnti-Bacterial AgentsBacterial Proteinsbeta-LactamasesDNA GyraseAMR-conferring genesMinimum inhibitory concentrationMolecular epidemiologyMultidrug-resistant organismsNosocomial infectionsRisk factors analysis

Identifiers

PMID33892804
PMCPMC8062948
OpenAlexW3155454416

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.