Evidence map›Paper›PMID 33892515›Full record

ArticleThe New phytologist2021

Rice contains a biosynthetic gene cluster associated with production of the casbane-type diterpenoid phytoalexin ent-10-oxodepressin.

Jin Liang, Qinqin Shen, Liping Wang, Jiang Liu, Jingye Fu, Le Zhao, Meimei Xu, Reuben J Peters, Qiang Wang

Open access · greenAbstract read
In one paragraph

Article in The New phytologist, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 45 citations in OpenAlex.

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  16. Lateral transfers lead to the birth of momilactone biosynthetic gene clusters in grass.The Plant journal : for cell and molecular biology · 2022
    Article
  17. Review
  18. How do plants defend themselves against pathogens-Biochemical mechanisms and genetic interventions.Physiology and molecular biology of plants : an international journal of functional plant biology · 2022
    Review
  19. Mining of theJournal of natural products · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Jin LiangState Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, Sichuan, 611130, China.ORCID 0000-0002-8862-7021
Qinqin ShenState Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, Sichuan, 611130, China.
Liping WangState Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, Sichuan, 611130, China.
Jiang LiuState Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, Sichuan, 611130, China.ORCID 0000-0001-8791-3053
Jingye FuState Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, Sichuan, 611130, China.ORCID 0000-0002-0378-2138
Le ZhaoRoy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA, 50011, USA.
Meimei XuRoy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA, 50011, USA.
Reuben J PetersRoy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA, 50011, USA.ORCID 0000-0003-4691-8477
Qiang WangState Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, Sichuan, 611130, China.ORCID 0000-0002-7051-8177
Sichuan Agricultural University · CNIowa State University · US

Funding

Purchase of replacement GC-MS for Peters R35/MIRA (GM131885)R35GM131885 · NIGMS · IOWA STATE UNIVERSITY · PI PETERS, REUBEN JOHN · 2019 to 2023
$2.6M
NIGMS NIH HHS R35 GM131885
6 · The paper itself

Abstract

Diterpenoids play important roles in rice microbial disease resistance as phytoalexins, as well as acting in allelopathy and abiotic stress responses. Recently, the casbane-type phytoalexin ent-10-oxodepressin was identified in rice, but its biosynthesis has not yet been elucidated. Here ent-10-oxodepressin biosynthesis was investigated via co-expression analysis and biochemical characterisation, with use of the CRISPR/Cas9 technology for genetic analysis. The results identified a biosynthetic gene cluster (BGC) on rice chromosome 7 (c7BGC), containing the relevant ent-casbene synthase (OsECBS), and four cytochrome P450 (CYP) genes from the CYP71Z subfamily. Three of these CYPs were shown to act on ent-casbene, with CYP71Z2 able to produce a keto group at carbon-5 (C5), while the closely related paralogues CYP71Z21 and CYP71Z22 both readily produce a keto group at C10. Together these C5 and C10 oxidases can elaborate ent-casbene to ent-10-oxodepressin (5,10-diketo-ent-casbene). OsECBS knockout lines no longer produce casbane-type diterpenoids and exhibit impaired resistance to the rice fungal blast pathogen Magnaporthe oryzae. Elucidation of ent-10-oxodepressin biosynthesis and the associated c7BGC provides not only a potential target for molecular breeding, but also, gives the intriguing parallels to the independently assembled BGCs for casbene-derived diterpenoids in the Euphorbiaceae, further insight into plant BGC evolution, as discussed here.

Indexed as

DiterpenesOryzaSesquiterpenesAscomycotaMultigene FamilyPhytoalexinsPlant ProteinsDiterpenesent-10-oxodepressinPhytoalexinsPlant ProteinsSesquiterpenesbiosynthesiscasbenedisease resistancegene clusterphytoalexinsrice

Identifiers

PMID33892515
PMCPMC9044444
OpenAlexW3154619941

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.