Evidence map›Paper›PMID 33890630›Full record

ArticleG3 (Bethesda, Md.)2021

Genome and transcriptome of a pathogenic yeast, Candida nivariensis.

Yunfan Fan, Andrew N Gale, Anna Bailey, Kali Barnes, Kiersten Colotti, Michal Mass, Luke B Morina, Bailey Robertson, Remy Schwab, Niki Tselepidakis and 1 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in G3 (Bethesda, Md.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 52% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Yunfan FanDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.ORCID 0000-0002-3765-5313
Andrew N GaleDepartment of Biology, Johns Hopkins University, Baltimore, MD 21218, USA.ORCID 0000-0002-1885-216X
Anna BaileyDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.
Kali BarnesDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.
Kiersten ColottiDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.
Michal MassDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.
Luke B MorinaDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.
Bailey RobertsonDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.
Remy SchwabDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.
Niki TselepidakisDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.
Winston TimpDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.ORCID 0000-0003-2083-6027
Johns Hopkins University · US

Funding

Nanopore based profiling of epigenetic stateR01HG009190 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI TIMP, WINSTON GEORGE · 2017 to 2024
$4.8M
CIHR DFS-157831NHGRI NIH HHS R01 HG009190
6 · The paper itself

Abstract

We present a highly contiguous genome and transcriptome of the pathogenic yeast, Candida nivariensis. We sequenced both the DNA and RNA of this species using both the Oxford Nanopore Technologies and Illumina platforms. We assembled the genome into an 11.8 Mb draft composed of 16 contigs with an N50 of 886 Kb, including a circular mitochondrial sequence of 28 Kb. Using direct RNA nanopore sequencing and Illumina cDNA sequencing, we constructed an annotation of our new assembly, supplemented by lifting over genes from Saccharomyces cerevisiae and Candida glabrata.

Indexed as

Saccharomyces cerevisiaeTranscriptomeGenomeRNASaccharomycetalesSequence Analysis, DNARNACandida nivariensisgenome assemblynanopore sequencingpathogenic yeasttranscriptome

Identifiers

PMID33890630
PMCPMC8496292
OpenAlexW3155152493

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.