Evidence map›Paper›PMID 33890404›Full record

ArticleMolecular systems biology2021

MicroRNA governs bistable cell differentiation and lineage segregation via a noncanonical feedback.

Chung-Jung Li, Ee Shan Liau, Yi-Han Lee, Yang-Zhe Huang, Ziyi Liu, Andrew Willems, Victoria Garside, Edwina McGlinn, Jun-An Chen, Tian Hong

Abstract read
In one paragraph

Article in Molecular systems biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
  2. miRNA modules for precise, tunable control of gene expression.bioRxiv : the preprint server for biology · 2025
    Article
  3. Article
  4. Mathematical Modeling for Oscillations Driven by Noncoding RNAs.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Control of cell state transitions by post-transcriptional regulation.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  11. LncRNAiScience · 2024
    Article
  12. Article
  13. Theoretical and computational tools to model multistable gene regulatory networks.Reports on progress in physics. Physical Society (Great Britain) · 2023
    Review
  14. Article
  15. Transcription ofJournal of developmental biology · 2023
    Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Chung-Jung LiMolecular and Cell Biology, Taiwan International Graduate Program, Academia Sinica and Graduate Institute of Life Science, National Defense Medical Center, Taipei, Taiwan.ORCID 0000-0002-4114-3628
Ee Shan LiauMolecular and Cell Biology, Taiwan International Graduate Program, Academia Sinica and Graduate Institute of Life Science, National Defense Medical Center, Taipei, Taiwan.ORCID 0000-0002-4115-5573
Yi-Han LeeInstitute of Molecular Biology, Academia Sinica, Taipei, Taiwan.ORCID 0000-0001-7650-2443
Yang-Zhe HuangInstitute of Molecular Biology, Academia Sinica, Taipei, Taiwan.ORCID 0000-0002-3875-994X
Ziyi LiuGenome Science and Technology Program, The University of Tennessee, Knoxville, TN, USA.ORCID 0000-0001-7242-2227
Andrew WillemsGenome Science and Technology Program, The University of Tennessee, Knoxville, TN, USA.ORCID 0000-0002-7927-0745
Victoria GarsideEMBL Australia, Australian Regenerative Medicine Institute, Monash University, Clayton, Vic, Australia.ORCID 0000-0002-4646-0964
Edwina McGlinnEMBL Australia, Australian Regenerative Medicine Institute, Monash University, Clayton, Vic, Australia.ORCID 0000-0002-1829-986X
Jun-An ChenMolecular and Cell Biology, Taiwan International Graduate Program, Academia Sinica and Graduate Institute of Life Science, National Defense Medical Center, Taipei, Taiwan.ORCID 0000-0001-9870-3203
Tian HongDepartment of Biochemistry & Cellular and Molecular Biology, The University of Tennessee, Knoxville, TN, USA.ORCID 0000-0002-8212-7050

Funding

Mathametical modeling of cell fate transitions regulated by ultra-feedbacksR01GM140462 · NIGMS · UNIVERSITY OF TENNESSEE KNOXVILLE · PI HONG, TIAN · 2020 to 2022
$600k
NIGMS NIH HHS R01 GM140462
6 · The paper itself

Abstract

Positive feedback driven by transcriptional regulation has long been considered a key mechanism underlying cell lineage segregation during embryogenesis. Using the developing spinal cord as a paradigm, we found that canonical, transcription-driven feedback cannot explain robust lineage segregation of motor neuron subtypes marked by two cardinal factors, Hoxa5 and Hoxc8. We propose a feedback mechanism involving elementary microRNA-mRNA reaction circuits that differ from known feedback loop-like structures. Strikingly, we show that a wide range of biologically plausible post-transcriptional regulatory parameters are sufficient to generate bistable switches, a hallmark of positive feedback. Through mathematical analysis, we explain intuitively the hidden source of this feedback. Using embryonic stem cell differentiation and mouse genetics, we corroborate that microRNA-mRNA circuits govern tissue boundaries and hysteresis upon motor neuron differentiation with respect to transient morphogen signals. Our findings reveal a previously underappreciated feedback mechanism that may have widespread functions in cell fate decisions and tissue patterning.

Indexed as

Feedback, PhysiologicalAnimalsBase SequenceCell DifferentiationCell LineageFemaleGene Expression RegulationGene Regulatory NetworksHomeodomain ProteinsKineticsMaleMiceMice, Inbred C57BLMicroRNAsModels, BiologicalMotor NeuronsHomeodomain ProteinsHoxa5 protein, mouseHoxc8 protein, mouseMicroRNAsRNA, MessengerTranscription FactorsTretinoinmotor neuron differentiationpositive feedback looppost-transcriptional regulationsingle-cell RNA sequencingtissue boundary formation

Identifiers

PMID33890404
PMCPMC8062999

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.