Evidence map›Paper›PMID 33890127›Full record

ArticleAmino acids2021

The effect of acidic pH on the adsorption and lytic activity of the peptides Polybia-MP1 and its histidine-containing analog in anionic lipid membrane: a biophysical study by molecular dynamics and spectroscopy.

Ingrid Bernardes Santana Martins, Taisa Giordano Viegas, Dayane Dos Santos Alvares, Bibiana Monson de Souza, Mário Sérgio Palma, João Ruggiero Neto, Alexandre Suman de Araujo

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In one paragraph

Article in Amino acids, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Ingrid Bernardes Santana MartinsDepartment of Physics, IBILCE, UNESP-São Paulo State University, Cristóvão Colombo, 2265-Jardim Nazareth, São José do Rio Preto, SP, 15054-000, Brazil.ORCID http://orcid.org/0000-0001-9970-6035
Taisa Giordano ViegasDepartment of Physics, IBILCE, UNESP-São Paulo State University, Cristóvão Colombo, 2265-Jardim Nazareth, São José do Rio Preto, SP, 15054-000, Brazil.ORCID http://orcid.org/0000-0002-8315-1300
Dayane Dos Santos AlvaresDepartment of Physics, IBILCE, UNESP-São Paulo State University, Cristóvão Colombo, 2265-Jardim Nazareth, São José do Rio Preto, SP, 15054-000, Brazil.ORCID http://orcid.org/0000-0002-6521-9148
Bibiana Monson de SouzaDepartment of Basic and Applied Biology, Institute of Biosciences, UNESP-São Paulo State University, Rio Claro, SP, Brazil.ORCID http://orcid.org/0000-0002-4355-2361
Mário Sérgio PalmaDepartment of Basic and Applied Biology, Institute of Biosciences, UNESP-São Paulo State University, Rio Claro, SP, Brazil.ORCID http://orcid.org/0000-0002-7363-8211
João Ruggiero NetoDepartment of Physics, IBILCE, UNESP-São Paulo State University, Cristóvão Colombo, 2265-Jardim Nazareth, São José do Rio Preto, SP, 15054-000, Brazil. joao.ruggiero@unesp.br.ORCID http://orcid.org/0000-0002-2283-3316
Alexandre Suman de AraujoDepartment of Physics, IBILCE, UNESP-São Paulo State University, Cristóvão Colombo, 2265-Jardim Nazareth, São José do Rio Preto, SP, 15054-000, Brazil. alexandre.suman@unesp.br.ORCID http://orcid.org/0000-0001-9376-9748
Universidade Estadual Paulista (Unesp) · BR

Funding

Fapesp 2010/18169-3Fapesp 2015/25619-9Fapesp 2015/25620-7Fapesp 2016/16212-5
6 · The paper itself

Abstract

Antimicrobial peptides (AMPs) are part of the innate immune system of many species. AMPs are short sequences rich in charged and non-polar residues. They act on the lipid phase of the plasma membrane without requiring membrane receptors. Polybia-MP1 (MP1), extracted from a native wasp, is a broad-spectrum bactericide, an inhibitor of cancer cell proliferation being non-hemolytic and non-cytotoxic. MP1 mechanism of action and its adsorption mode is not yet completely known. Its adsorption to lipid bilayer and lytic activity is most likely dependent on the ionization state of its two acidic and three basic residues and consequently on the bulk pH. Here we investigated the effect of bulk acidic (pH 5.5) and neutral pH (7.4) solution on the adsorption, insertion, and lytic activity of MP1 and its analog H-MP1 to anionic (7POPC:3POPG) model membrane. H-MP1 is a synthetic analog of MP1 with lysines replaced by histidines. Bulk pH changes could modulate this peptide efficiency. The combination of different experimental techniques and molecular dynamics (MD) simulations showed that the adsorption, insertion, and lytic activity of H-MP1 are highly sensitive to bulk pH in opposition to MP1. The atomistic details, provided by MD simulations, showed peptides contact their N-termini to the bilayer before the insertion and then lay parallel to the bilayer. Their hydrophobic faces inserted into the acyl chain phase disturb the lipid-packing.

Indexed as

AdsorptionAnimalsAntimicrobial Cationic PeptidesHistidineHydrogen-Ion ConcentrationHydrophobic and Hydrophilic InteractionsLipid BilayersMolecular Dynamics SimulationWaspsWasp VenomsAntimicrobial Cationic PeptidesHistidineLipid Bilayerspolybia-MPI, Polybia paulistaWasp VenomsAntimicrobial peptidesConformational analysisLytic activityMolecular dynamics simulationpH sensitive peptide

Identifiers

PMID33890127
OpenAlexW3156553564

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.