Evidence map›Paper›PMID 33888711›Full record

ArticleNPJ genomic medicine2021

Rapid whole genome sequencing impacts care and resource utilization in infants with congenital heart disease.

Nathaly M Sweeney, Shareef A Nahas, Shimul Chowdhury, Sergey Batalov, Michelle Clark, Sara Caylor, Julie Cakici, John J Nigro, Yan Ding, Narayanan Veeraraghavan and 3 more

Erratum issued Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in NPJ genomic medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. It is linked to trial NCT03385876 (Rapid Whole Genome Sequencing), which is not on this map. Cited by 48 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed, 1 pooled it
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03385876 naenrolling by invitationnot on this map

Rapid Whole Genome Sequencing (rWGS): Rapid Genomic Sequencing for Acutely Ill Patients and the Collection, Storage, Analysis, and Distribution of Biological Samples, Genomic and Clinical Data

TypeinterventionalSponsorRady Pediatric Genomics & Systems Medicine InstituteRan2017 to 2050Enrolled100,000ConditionsGenetic Diseases, Genetic SyndromeArmsGenomic sequencing and molecular diagnostic results, if any
3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 1 synthesis or guideline pooled it, 70 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Rapid genomic sequencing in the NICU: Who to test and why.European journal of human genetics : EJHG · 2026
    Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Genetics of Congenital Heart Disease.Clinics in perinatology · 2025
    Review
  11. Review
  12. Article
  13. Current and future diagnostics of congenital heart disease (CHD).Medizinische Genetik : Mitteilungsblatt des Berufsverbandes Medizinische Genetik e.V · 2025
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Nathaly M SweeneyRady Children's Institute for Genomic Medicine, San Diego, CA, USA. nmsweeney@health.ucsd.edu.ORCID http://orcid.org/0000-0002-0182-6600
Shareef A NahasRady Children's Institute for Genomic Medicine, San Diego, CA, USA.
Shimul ChowdhuryRady Children's Institute for Genomic Medicine, San Diego, CA, USA.
Sergey BatalovRady Children's Institute for Genomic Medicine, San Diego, CA, USA.ORCID http://orcid.org/0000-0002-0925-0554
Michelle ClarkRady Children's Institute for Genomic Medicine, San Diego, CA, USA.ORCID http://orcid.org/0000-0001-6828-8934
Sara CaylorRady Children's Institute for Genomic Medicine, San Diego, CA, USA.
Julie CakiciRady Children's Institute for Genomic Medicine, San Diego, CA, USA.ORCID http://orcid.org/0000-0001-5672-3396
John J NigroRady Children's Hospital, San Diego, CA, USA.
Yan DingRady Children's Institute for Genomic Medicine, San Diego, CA, USA.
Narayanan VeeraraghavanRady Children's Institute for Genomic Medicine, San Diego, CA, USA.ORCID http://orcid.org/0000-0001-5986-4880
Charlotte HobbsRady Children's Institute for Genomic Medicine, San Diego, CA, USA.
David DimmockRady Children's Institute for Genomic Medicine, San Diego, CA, USA.ORCID http://orcid.org/0000-0001-6690-2523
Stephen F KingsmoreRady Children's Institute for Genomic Medicine, San Diego, CA, USA.ORCID http://orcid.org/0000-0001-7180-2527
Children’s Institute · USUniversity of California San Diego · US

Funding

Training In Cardiovascular Physiology & PharmacologyT32HL007444 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Ju Chen, Robert Scott Ross · 1985 to 2026
$11.1M
ConProject-001U19HD077693 · NICHD · RADY PEDIATRIC GENOMICS & SYSTEMS MEDICINE INSTITUTE · PI KINGSMORE, STEPHEN FRANCIS · 2013 to 2018
$6.2M
UCSD PRIDE Faculty Development Program in Cardiovascular SciencesR25HL145817 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Robert Scott Ross, Joann Trejo · 2019 to 2026
$3.3M
Developing Diverse Physician-Investigator Leaders for the Future of Child HealthK12HD105271 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Gabriel G Haddad · 2021 to 2026
$1.8M
Replacement of Small Animal Echocardiographic InstrumentationS10OD010417 · OD · VETERANS MEDICAL RESEARCH FDN/SAN DIEGO · PI ROSS, ROBERT SCOTT · 2012 to 2012
$371k
NHLBI NIH HHS R25 HL145817NHLBI NIH HHS T32 HL007444NICHD NIH HHS K12 HD105271NICHD NIH HHS U19 HD077693NIH HHS S10 OD010417
6 · The paper itself

Abstract

Congenital heart disease (CHD) is the most common congenital anomaly and a major cause of infant morbidity and mortality. While morbidity and mortality are highest in infants with underlying genetic conditions, molecular diagnoses are ascertained in only ~20% of cases using widely adopted genetic tests. Furthermore, cost of care for children and adults with CHD has increased dramatically. Rapid whole genome sequencing (rWGS) of newborns in intensive care units with suspected genetic diseases has been associated with increased rate of diagnosis and a net reduction in cost of care. In this study, we explored whether the clinical utility of rWGS extends to critically ill infants with structural CHD through a retrospective review of rWGS study data obtained from inpatient infants < 1 year with structural CHD at a regional children's hospital. rWGS diagnosed genetic disease in 46% of the enrolled infants. Moreover, genetic disease was identified five times more frequently with rWGS than microarray ± gene panel testing in 21 of these infants (rWGS diagnosed 43% versus 10% with microarray ± gene panels, p = 0.02). Molecular diagnoses ranged from syndromes affecting multiple organ systems to disorders limited to the cardiovascular system. The average daily hospital spending was lower in the time period post blood collection for rWGS compared to prior (p = 0.003) and further decreased after rWGS results (p = 0.000). The cost was not prohibitive to rWGS implementation in the care of this cohort of infants. rWGS provided timely actionable information that impacted care and there was evidence of decreased hospital spending around rWGS implementation.

Identifiers

PMID33888711
PMCPMC8062477
OpenAlexW3156173948

What OpenQuestion holds

Textmetadata
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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.