Evidence map›Paper›PMID 33888706›Full record

ArticleNature communications2021

Proteomics of protein trafficking by in vivo tissue-specific labeling.

Ilia A Droujinine, Amanda S Meyer, Dan Wang, Namrata D Udeshi, Yanhui Hu, David Rocco, Jill A McMahon, Rui Yang, JinJin Guo, Luye Mu and 11 more

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06817512 (Health Effects of Vitamin K2 Supplementation on Skeletal Muscle and Neurological Function After Ischemic Stroke), which is not on this map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
7.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06817512 naactive not recruitingnot on this mapstarted 2025, after this paper: background citation

Health Effects of Vitamin K2 Supplementation on Skeletal Muscle and Neurological Function After Ischemic Stroke

TypeinterventionalSponsorHarbin Medical UniversityRan2025 to 2028Enrolled190ConditionsIschemic StrokeArmsVitamin K2, Placebo
3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 111 citations in OpenAlex.

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  5. HNature chemical biology · 2026
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  16. SALVE: prediction of interorgan communication with transcriptome latent space representation.American journal of physiology. Heart and circulatory physiology · 2025
    Article
  17. Article
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4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 8 institutions in 2 countries.

Ilia A DroujinineDepartment of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA, USA. idroujinine@scripps.edu.ORCID http://orcid.org/0000-0003-1311-4392
Amanda S Meyer *Department of Stem Cell Biology and Regenerative Medicine, University of Southern California, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0003-1022-6137
Dan Wang *Department of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0003-2881-2273
Namrata D Udeshi *Broad Institute of Harvard and MIT, Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-5312-1402
Yanhui HuDepartment of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0003-1494-1402
David RoccoDepartment of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA, USA.
Jill A McMahonDepartment of Stem Cell Biology and Regenerative Medicine, University of Southern California, Los Angeles, CA, USA.
Rui YangDepartment of Stem Cell Biology and Regenerative Medicine, University of Southern California, Los Angeles, CA, USA.
JinJin GuoDepartment of Stem Cell Biology and Regenerative Medicine, University of Southern California, Los Angeles, CA, USA.
Luye MuDepartment of Electrical Engineering, Yale University, New Haven, CT, USA.
Dominique K CareyBroad Institute of Harvard and MIT, Cambridge, MA, USA.
Tanya SvinkinaBroad Institute of Harvard and MIT, Cambridge, MA, USA.
Rebecca ZengDepartment of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA, USA.
Tess BranonChan Zuckerberg Biohub, San Francisco, CA, USA.
Areya TabatabaiDepartment of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA, USA.
Justin A BoschDepartment of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA, USA.
John M AsaraDepartment of Medicine, Harvard Medical School, Boston, MA, USA.
Alice Y TingChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-8277-5226
Steven A CarrBroad Institute of Harvard and MIT, Cambridge, MA, USA.
Andrew P McMahonDepartment of Stem Cell Biology and Regenerative Medicine, University of Southern California, Los Angeles, CA, USA.
Norbert PerrimonDepartment of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA, USA. perrimon@genetics.med.harvard.edu.ORCID http://orcid.org/0000-0001-7542-472X
Harvard University · USUniversity of Southern California · USBroad Institute · USChan Zuckerberg Initiative (United States) · USBeth Israel Deaconess Medical Center · USHoward Hughes Medical Institute · USScripps Research Institute · USYale University · US

Funding

VectorP30CA006516 · NCI · DANA-FARBER CANCER INSTITUTE · PI A. Heather Eliassen · 1985 to 2026
$330.6M
Tuberous Sclerosis-Pathway and PathogenesisP01CA120964 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI David J. Kwiatkowski · 2007 to 2026
$35.9M
TRAINING GRANT IN GENETICST32GM007748 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI Anne O'Donnell-Luria, Louise Wilkins-Haug · 1985 to 2026
$12.0M
Mapping protein communication between organs in homeostasis and diseaseR01DK121409 · NIDDK · HARVARD MEDICAL SCHOOL · PI CARR, STEVEN A, MCMAHON, ANDREW P. · 2018 to 2022
$8.3M
Characterization of the Insulin to Autophagy Pathway in MusclesR01AR057352 · NIAMS · HARVARD MEDICAL SCHOOL · PI NORBERT PERRIMON · 2010 to 2026
$8.2M
Functional genomics resources for the Drosophila - TR&D3P41GM132087 · NIGMS · HARVARD MEDICAL SCHOOL · PI PERRIMON, NORBERT · 2019 to 2023
$6.8M
Howard Hughes Medical InstituteNCI NIH HHS P01 CA120964NCI NIH HHS P30 CA006516NIAMS NIH HHS R01 AR057352NIDDK NIH HHS R01 DK121409NIGMS NIH HHS P41 GM132087NIGMS NIH HHS T32 GM007748
6 · The paper itself

Abstract

Conventional approaches to identify secreted factors that regulate homeostasis are limited in their abilities to identify the tissues/cells of origin and destination. We established a platform to identify secreted protein trafficking between organs using an engineered biotin ligase (BirA*G3) that biotinylates, promiscuously, proteins in a subcellular compartment of one tissue. Subsequently, biotinylated proteins are affinity-enriched and identified from distal organs using quantitative mass spectrometry. Applying this approach in Drosophila, we identify 51 muscle-secreted proteins from heads and 269 fat body-secreted proteins from legs/muscles, including CG2145 (human ortholog ENDOU) that binds directly to muscles and promotes activity. In addition, in mice, we identify 291 serum proteins secreted from conditional BirA*G3 embryo stem cell-derived teratomas, including low-abundance proteins with hormonal properties. Our findings indicate that the communication network of secreted proteins is vast. This approach has broad potential across different model systems to identify cell-specific secretomes and mediators of interorgan communication in health or disease.

Indexed as

AnimalsAnimals, Genetically ModifiedBiotinBiotinylationCarbon-Nitrogen LigasesCell LineDisease Models, AnimalDrosophilaEmbryonic Stem CellsEscherichia coli ProteinsFemaleHumansMaleMiceProtein EngineeringProtein TransportBiotinbirA protein, E coliCarbon-Nitrogen LigasesEscherichia coli ProteinsRepressor Proteins

Identifiers

PMID33888706
PMCPMC8062696
OpenAlexW3155660502

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.