Evidence map›Paper›PMID 33888575›Full record

ArticleThorax2021

Circulating microbial cell-free DNA is associated with inflammatory host-responses in severe pneumonia.

Haopu Yang, Ghady Haidar, Nameer S Al-Yousif, Haris Zia, Daniel Kotok, Asim A Ahmed, Lily Blair, Sudeb Dalai, Sivan Bercovici, Carine Ho and 3 more

Open access · greenAbstract read
In one paragraph

Article in Thorax, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. The authors reply.Critical care medicine · 2025
    Article
  8. Observational
  9. Article
  10. "Now We Got Bad Blood": Beyond Phenotype Labels in an "Era" of Meta-omics in Critical Illness.American journal of respiratory and critical care medicine · 2024
    Article
  11. Article
  12. Cell-Free DNA DetectsAmerican journal of respiratory and critical care medicine · 2023
    Article
  13. Article
  14. Circulating Microbial Cell-Free DNA in Health and Disease.International journal of molecular sciences · 2023
    Review
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Haopu YangSchool of Medicine, Tsinghua University, Beijing, People's Republic of China.ORCID 0000-0001-6858-1778
Ghady HaidarDivision of Infectious Diseases, University of Pittsburgh Medical Center, Pittsburgh, Pennsylvania, USA.
Nameer S Al-YousifInternal Medicine Residency Program, Mercy, University of Pittsburgh Medical Center, Pittsburgh, Pennsylvania, USA.ORCID 0000-0002-2657-2360
Haris ZiaInternal Medicine Residency Program, McKeesport, University of Pittsburgh Medical Center, McKeesport, Pennsylvania, USA.
Daniel KotokWeston Hospital, Cleveland Clinic Florida, Weston, Florida, USA.
Asim A AhmedKarius Inc, Redwood City, California, USA.
Lily BlairKarius Inc, Redwood City, California, USA.
Sudeb DalaiKarius Inc, Redwood City, California, USA.
Sivan BercoviciKarius Inc, Redwood City, California, USA.
Carine HoKarius Inc, Redwood City, California, USA.
Bryan J McVerryDivision of Pulmonary Allergy and Critical Care Medicine, University of Pittsburgh Medical Center, Pittsburgh, Pennsylvania, USA.ORCID 0000-0002-1175-4874
Alison MorrisDivision of Pulmonary Allergy and Critical Care Medicine, University of Pittsburgh Medical Center, Pittsburgh, Pennsylvania, USA.
Georgios D KitsiosDivision of Pulmonary Allergy and Critical Care Medicine, University of Pittsburgh Medical Center, Pittsburgh, Pennsylvania, USA kitsiosg@upmc.edu.ORCID 0000-0002-1018-948X
University of Pittsburgh · USUniversity of Pittsburgh Medical Center · USCleveland Clinic Florida · US

Funding

Regulation of Cardiolin Byosynthesis in Epithelial InjuryP01HL114453 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MALLAMPALLI, RAMA K · 2014 to 2023
$21.3M
The Gut Microbiome in Carbapenem-Resistant Enterobacteriaceae Colonization, Persistence, Infection, and Tolerance after Lung or Liver TransplantationK23AI154546 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HAIDAR, GHADY · 2021 to 2025
$896k
Microbiome-based diagnosis of pneumonia in the acute respiratory distress syndromeK23HL139987 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KITSIOS, GEORGIOS · 2018 to 2022
$806k
NHLBI NIH HHS K23 HL139987NHLBI NIH HHS P01 HL114453NIAID NIH HHS K23 AI154546
6 · The paper itself

Abstract

Host inflammatory responses predict worse outcome in severe pneumonia, yet little is known about what drives dysregulated inflammation. We performed metagenomic sequencing of microbial cell-free DNA (mcfDNA) in 83 mechanically ventilated patients (26 culture-positive, 41 culture-negative pneumonia, 16 uninfected controls). Culture-positive patients had higher levels of mcfDNA than those with culture-negative pneumonia and uninfected controls (p<0.005). Plasma levels of inflammatory biomarkers (fractalkine, procalcitonin, pentraxin-3 and suppression of tumorigenicity-2) were independently associated with mcfDNA levels (adjusted p<0.05) among all patients with pneumonia. Such host-microbe interactions in the systemic circulation of patients with severe pneumonia warrant further large-scale clinical and mechanistic investigations.

Indexed as

Cell-Free Nucleic AcidsPneumoniaBiomarkersHumansProcalcitoninBiomarkersCell-Free Nucleic AcidsProcalcitoninpneumonia

Identifiers

PMID33888575
PMCPMC8785240
OpenAlexW3154917842

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.