Evidence map›Paper›PMID 33886614›Full record

ArticlePloS one2021

High-throughput screening of the ReFRAME, Pandemic Box, and COVID Box drug repurposing libraries against SARS-CoV-2 nsp15 endoribonuclease to identify small-molecule inhibitors of viral activity.

Ryan Choi, Mowei Zhou, Roger Shek, Jesse W Wilson, Logan Tillery, Justin K Craig, Indraneel A Salukhe, Sarah E Hickson, Neeraj Kumar, Rhema M James and 9 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.5field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 46 citations in OpenAlex.

  1. Review
  2. Article
  3. Functional implications of hexameric dynamics in SARS-CoV-2 Nsp15.Protein science : a publication of the Protein Society · 2025
    Article
  4. Article
  5. Article
  6. Coronavirus endoribonuclease antagonizes ZBP1-mediated necroptosis and delays multiple cell death pathways.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Article
  8. Article
  9. A fast-acting inhibitor of blood-stagebioRxiv : the preprint server for biology · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Dissecting the structural heterogeneity of proteins by native mass spectrometry.Protein science : a publication of the Protein Society · 2023
    Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 1 country.

Ryan ChoiDivision of Allergy and Infectious Diseases, Department of Medicine, Center for Emerging and Reemerging Infectious Diseases (CERID), University of Washington School of Medicine, Seattle, WA, United States of America.
Mowei ZhouEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory (PNNL), Richland, WA, United States of America.
Roger ShekDivision of Allergy and Infectious Diseases, Department of Medicine, Center for Emerging and Reemerging Infectious Diseases (CERID), University of Washington School of Medicine, Seattle, WA, United States of America.
Jesse W WilsonEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory (PNNL), Richland, WA, United States of America.
Logan TilleryDivision of Allergy and Infectious Diseases, Department of Medicine, Center for Emerging and Reemerging Infectious Diseases (CERID), University of Washington School of Medicine, Seattle, WA, United States of America.ORCID 0000-0002-5431-3489
Justin K CraigDivision of Allergy and Infectious Diseases, Department of Medicine, Center for Emerging and Reemerging Infectious Diseases (CERID), University of Washington School of Medicine, Seattle, WA, United States of America.
Indraneel A SalukheDepartment of Microbiology, University of Washington School of Medicine, Seattle, WA, United States of America.
Sarah E HicksonDepartment of Microbiology, University of Washington School of Medicine, Seattle, WA, United States of America.
Neeraj KumarEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory (PNNL), Richland, WA, United States of America.
Rhema M JamesEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory (PNNL), Richland, WA, United States of America.
Garry W BuchkoEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory (PNNL), Richland, WA, United States of America.ORCID 0000-0002-3639-1061
Ruilian WuBioenergy and Biome Sciences, Los Alamos National Laboratory (LANL), Los Alamos, NM, United States of America.
Sydney HuffDivision of Allergy and Infectious Diseases, Department of Medicine, Center for Emerging and Reemerging Infectious Diseases (CERID), University of Washington School of Medicine, Seattle, WA, United States of America.
Tu-Trinh NguyenCalibr, a division of The Scripps Research Institute, La Jolla, CA, United States of America.
Brett L HurstInstitute for Antiviral Research, Utah State University, Logan, UT, United States of America.
Sara CherryDepartment of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA, United States of America.
Lynn K BarrettDivision of Allergy and Infectious Diseases, Department of Medicine, Center for Emerging and Reemerging Infectious Diseases (CERID), University of Washington School of Medicine, Seattle, WA, United States of America.
Jennifer L HydeDepartment of Microbiology, University of Washington School of Medicine, Seattle, WA, United States of America.
Wesley C Van VoorhisDivision of Allergy and Infectious Diseases, Department of Medicine, Center for Emerging and Reemerging Infectious Diseases (CERID), University of Washington School of Medicine, Seattle, WA, United States of America.ORCID 0000-0001-6141-2015
University of Washington · USPacific Northwest National Laboratory · USLos Alamos National Laboratory · USScripps Research Institute · USUniversity of Pennsylvania · USUtah State University · US

Funding

Task B6: In Vitro Assessment for Antimicrobial Activity Against Respiratory Viruses, Including SARS-CoV-275N93019D00021 · NIAID · UTAH STATE UNIVERSITY · PI JULANDER, JUSTIN · 2019 to 2025
$7.3M
CLINICAL CENTRAL LABORATORY SERVICES TO SUPPORT COVID-19 VACCINE STUDIES75N93021D00021 · NIAID · PI BEECH, TIFFANI · 2021 to 2023
$1.6M
MURINE MONOCLONAL ANTIBODIES TO HUMAN RESPIRATORY GLYCOPROTEINZ01CL000021 · CLC · CLINICAL CENTER · PI SHELHAMER, J H · 1987 to 1988
–
CLC NIH HHS 75N90019D00021NIAID NIH HHS 75N93019D00021NIAID NIH HHS 75N93021D00021NIAID NIH HHS HHSN272201700059CORFDO NIH HHS 75N99019D00021
6 · The paper itself

Abstract

SARS-CoV-2 has caused a global pandemic, and has taken over 1.7 million lives as of mid-December, 2020. Although great progress has been made in the development of effective countermeasures, with several pharmaceutical companies approved or poised to deliver vaccines to market, there is still an unmet need of essential antiviral drugs with therapeutic impact for the treatment of moderate-to-severe COVID-19. Towards this goal, a high-throughput assay was used to screen SARS-CoV-2 nsp15 uracil-dependent endonuclease (endoU) function against 13 thousand compounds from drug and lead repurposing compound libraries. While over 80% of initial hit compounds were pan-assay inhibitory compounds, three hits were confirmed as nsp15 endoU inhibitors in the 1-20 μM range in vitro. Furthermore, Exebryl-1, a ß-amyloid anti-aggregation molecule for Alzheimer's therapy, was shown to have antiviral activity between 10 to 66 μM, in Vero 76, Caco-2, and Calu-3 cells. Although the inhibitory concentrations determined for Exebryl-1 exceed those recommended for therapeutic intervention, our findings show great promise for further optimization of Exebryl-1 as an nsp15 endoU inhibitor and as a SARS-CoV-2 antiviral.

Indexed as

COVID-19 Drug TreatmentDrug RepositioningAnimalsAntiviral AgentsCaco-2 CellsChlorocebus aethiopsCOVID-19EndoribonucleasesHigh-Throughput Screening AssaysHumansMolecular Docking SimulationSARS-CoV-2Small Molecule LibrariesVero CellsViral Nonstructural ProteinsAntiviral AgentsEndoribonucleasesnidoviral uridylate-specific endoribonucleaseSmall Molecule LibrariesViral Nonstructural Proteins

Identifiers

PMID33886614
PMCPMC8062000
OpenAlexW3155884323

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.