Evidence map›Paper›PMID 33884954›Full record

ArticleeLife2021

T cell self-reactivity during thymic development dictates the timing of positive selection.

Lydia K Lutes, Zoë Steier, Laura L McIntyre, Shraddha Pandey, James Kaminski, Ashley R Hoover, Silvia Ariotti, Aaron Streets, Nir Yosef, Ellen A Robey

Open access · goldAbstract readComparative StudyVideo-Audio Media
In one paragraph

Article in eLife, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. The partitioning of TCR repertoires by thymic selection.The Journal of experimental medicine · 2024
    Review
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  6. Article
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Lydia K LutesDivision of Immunology and Pathogenesis, Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.ORCID 0000-0001-6133-6294
Zoë SteierDepartment of Bioengineering, University of California, Berkeley, Berkeley, United States.
Laura L McIntyreDivision of Immunology and Pathogenesis, Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.
Shraddha PandeyDivision of Immunology and Pathogenesis, Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.
James KaminskiCenter for Computational Biology, University of California, Berkeley, Berkeley, United States.
Ashley R HooverDivision of Immunology and Pathogenesis, Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.
Silvia AriottiDivision of Immunology and Pathogenesis, Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.
Aaron StreetsDepartment of Bioengineering, University of California, Berkeley, Berkeley, United States.
Nir YosefDepartment of Bioengineering, University of California, Berkeley, Berkeley, United States.ORCID 0000-0001-9004-1225
Ellen A RobeyDivision of Immunology and Pathogenesis, Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.ORCID 0000-0002-3630-5266
University of California, Berkeley · USChan Zuckerberg Initiative (United States) · USRagon Institute of MGH, MIT and Harvard · US

Funding

Signals That Control Thymocyte MigrationR01AI064227 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI ELLEN A ROBEY · 2006 to 2026
$7.4M
Immunology & Pathogenesis Program Training GrantT32AI100829 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI Gregory M Barton, ELLEN A ROBEY · 2012 to 2026
$4.7M
Spatial and temporal mapping of cell fate within lymphoid tissueR24AI145816 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROBEY, ELLEN A, STREETS, AARON · 2020 to 2024
$3.2M
NIAID NIH HHS R01 AI064227NIAID NIH HHS R24 AI145816NIAID NIH HHS T32 AI100829
6 · The paper itself

Abstract

Functional tuning of T cells based on their degree of self-reactivity is established during positive selection in the thymus, although how positive selection differs for thymocytes with relatively low versus high self-reactivity is unclear. In addition, preselection thymocytes are highly sensitive to low-affinity ligands, but the mechanism underlying their enhanced T cell receptor (TCR) sensitivity is not fully understood. Here we show that murine thymocytes with low self-reactivity experience briefer TCR signals and complete positive selection more slowly than those with high self-reactivity. Additionally, we provide evidence that cells with low self-reactivity retain a preselection gene expression signature as they mature, including genes previously implicated in modulating TCR sensitivity and a novel group of ion channel genes. Our results imply that thymocytes with low self-reactivity downregulate TCR sensitivity more slowly during positive selection, and associate membrane ion channel expression with thymocyte self-reactivity and progress through positive selection.

Indexed as

Cell DifferentiationSelf ToleranceAnimalsCell LineageGene Expression RegulationHistocompatibility Antigens Class IIon ChannelsKineticsMiceMice, Inbred C57BLMice, TransgenicPhenotypeReceptors, Antigen, T-CellSignal TransductionThymocytesThymus GlandHistocompatibility Antigens Class IIon ChannelsReceptors, Antigen, T-Celldevelopmental biologyimmunologyinflammationion channelsmousepositive selectionself-reactivityTCRthymocyte

Identifiers

PMID33884954
PMCPMC8116051
OpenAlexW3154163006

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.