Evidence map›Paper›PMID 33883814›Full record

ArticleCanadian journal of veterinary research = Revue canadienne de recherche veterinaire2021

Classification of porcine reproductive and respiratory syndrome virus in Ontario using Bayesian phylogenetics and assessment of temporal trends.

Dylan John Melmer, Robert Friendship, Terri L O'Sullivan, Amy L Greer, Dinko Novosel, Davor Ojkić, Zvonimir Poljak

Open access · greenAbstract read
In one paragraph

Article in Canadian journal of veterinary research = Revue canadienne de recherche veterinaire, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Dylan John MelmerDepartment of Population Medicine (Melmer, Friendship, O'Sullivan, Greer, Poljak) and Animal Health Laboratory (Ojkić), University of Guelph, Guelph, Ontario N1G 2W1; Department of Pathology, Croatian Veterinary Institute, Savska cesta 143, 10000 Zagreb, Croatia (Novosel); Department of Animal Science, University of Zagreb, Svetošimunska cesta 25, 10000 Zagreb, Croatia (Ojkić).
Robert FriendshipDepartment of Population Medicine (Melmer, Friendship, O'Sullivan, Greer, Poljak) and Animal Health Laboratory (Ojkić), University of Guelph, Guelph, Ontario N1G 2W1; Department of Pathology, Croatian Veterinary Institute, Savska cesta 143, 10000 Zagreb, Croatia (Novosel); Department of Animal Science, University of Zagreb, Svetošimunska cesta 25, 10000 Zagreb, Croatia (Ojkić).
Terri L O'SullivanDepartment of Population Medicine (Melmer, Friendship, O'Sullivan, Greer, Poljak) and Animal Health Laboratory (Ojkić), University of Guelph, Guelph, Ontario N1G 2W1; Department of Pathology, Croatian Veterinary Institute, Savska cesta 143, 10000 Zagreb, Croatia (Novosel); Department of Animal Science, University of Zagreb, Svetošimunska cesta 25, 10000 Zagreb, Croatia (Ojkić).
Amy L GreerDepartment of Population Medicine (Melmer, Friendship, O'Sullivan, Greer, Poljak) and Animal Health Laboratory (Ojkić), University of Guelph, Guelph, Ontario N1G 2W1; Department of Pathology, Croatian Veterinary Institute, Savska cesta 143, 10000 Zagreb, Croatia (Novosel); Department of Animal Science, University of Zagreb, Svetošimunska cesta 25, 10000 Zagreb, Croatia (Ojkić).
Dinko NovoselDepartment of Population Medicine (Melmer, Friendship, O'Sullivan, Greer, Poljak) and Animal Health Laboratory (Ojkić), University of Guelph, Guelph, Ontario N1G 2W1; Department of Pathology, Croatian Veterinary Institute, Savska cesta 143, 10000 Zagreb, Croatia (Novosel); Department of Animal Science, University of Zagreb, Svetošimunska cesta 25, 10000 Zagreb, Croatia (Ojkić).
Davor OjkićDepartment of Population Medicine (Melmer, Friendship, O'Sullivan, Greer, Poljak) and Animal Health Laboratory (Ojkić), University of Guelph, Guelph, Ontario N1G 2W1; Department of Pathology, Croatian Veterinary Institute, Savska cesta 143, 10000 Zagreb, Croatia (Novosel); Department of Animal Science, University of Zagreb, Svetošimunska cesta 25, 10000 Zagreb, Croatia (Ojkić).
Zvonimir PoljakDepartment of Population Medicine (Melmer, Friendship, O'Sullivan, Greer, Poljak) and Animal Health Laboratory (Ojkić), University of Guelph, Guelph, Ontario N1G 2W1; Department of Pathology, Croatian Veterinary Institute, Savska cesta 143, 10000 Zagreb, Croatia (Novosel); Department of Animal Science, University of Zagreb, Svetošimunska cesta 25, 10000 Zagreb, Croatia (Ojkić).
Croatian Veterinary Institute · HRUniversity of Guelph · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Porcine reproductive and respiratory syndrome virus (PRRSV) is one of the most important swine viruses globally, including in Ontario, Canada. Understanding the evolution and relation of the various PRRSV genotypes in Ontario can provide insight into the epidemiology of the virus. The objectives of this study were to i) describe the variability of PRRSV genotypes in Ontario swine herds, and ii) evaluate possible groupings based on PRRSV genomic data. Virus open reading frame 5 (ORF-5) sequences collected from 2010 to 2018 were obtained from the Animal Health Laboratory, University of Guelph and Bayesian phylogenetic models were created from these. The PRRSV population of Ontario was then categorized into 10 distinct clades. Model comparisons indicated that the model with a constant population assumption fit the data best, which suggests that the net change in the PRRS virus variation of the entire population over the last decade was low. Nonetheless, viruses grouped into individual clades showed temporal clustering during distinct time intervals of the entire study period (

Indexed as

PhylogenyAnimalsBayes TheoremCluster AnalysisOntarioPorcine Reproductive and Respiratory SyndromePorcine respiratory and reproductive syndrome virusRecombination, GeneticSwineTime Factors

Identifiers

PMID33883814
PMCPMC7995535
OpenAlexW3154321427

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.