ArticleScientific reports2021
Impact of different numbers of microsatellite markers on population genetic results using SLAF-seq data for Rhododendron species.
Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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14 citing papers in PubMed.
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- A fractal pattern of hierarchical genetic population structure in mixed stocks across fish segregated by dams revealed by genomic resources for curimba Prochilodus lineatus.Journal of fish biology · 2026Article
- Cryptic Diversity and Genetic Variation in a Korean Endemic Freshwater Fish, the Korean Dark Chub (Ecology and evolution · 2026Article
- Isolation and characterization of 16 new microsatellite loci markers for the European red squirrel (Sciurus vulgaris).Molecular biology reports · 2026Article
- Novel Efficient Genome-Wide STR Panels for the Conservation of the Endemic Catfishes of Western Ghats: Critically Endangered Hemibagrus punctatus Jerdon (1849) and Vulnerable Horabagrus brachysoma (Günther, 1864).Biochemical genetics · 2025Article
- Elucidating genetic variability between randomly bred domestic cats and Persian domestic cats from different geographical locations using microsatellite markers.Veterinary medicine and science · 2024Article
- Review
- Questioning inbreeding: Could outbreeding affect productivity in the North African catfish in Thailand?PloS one · 2024Article
- Complete plastid genome structure of 13 Asian Justicia (Acanthaceae) species: comparative genomics and phylogenetic analyses.BMC plant biology · 2023Article
- Development of twenty-one novel microsatellite loci for Gila topminnow, Poeciliopsis occidentalis occidentalis.Molecular biology reports · 2023Article
- High-Throughput Microsatellite Markers Development for Genetic Characterization of EmergingJournal of fungi (Basel, Switzerland) · 2023Article
- Genome-Wide Survey and Development of the First Microsatellite Markers Database (International journal of molecular sciences · 2022Article
- Performance comparison of gel and capillary electrophoresis-based microsatellite genotyping strategies in a population research and kinship testing framework.BMC research notes · 2021Article
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4 authors.
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Abstract
Microsatellites (simple sequence repeats, SSRs) are co-dominant nuclear markers that are widely used in population genetic studies. Population genetic parameters from different studies might be significantly influenced by differences in marker number. In our study, 265 sequences with polymorphic microsatellites were obtained from SLAF-seq data. Then, subpopulations containing different numbers (5, 6, 7,…, 15, 20, 25, 30, 35, 40) of markers were genotyped 10 times to investigate the impact of marker numbers on population genetic diversity results. Our results show that genotyping with less than 11 or 12 microsatellite markers lead to significant deviations in the population genetic diversity or genetic structure results. In order to provide markers for population genetic and conservation studies for Rhododendron, 26 SSR primers were designed and validated in three species.
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