Evidence map›Paper›PMID 33883010›Full record

ArticleBiotechnology for biofuels2021

Further engineering of R. toruloides for the production of terpenes from lignocellulosic biomass.

James Kirby, Gina M Geiselman, Junko Yaegashi, Joonhoon Kim, Xun Zhuang, Mary Bao Tran-Gyamfi, Jan-Philip Prahl, Eric R Sundstrom, Yuqian Gao, Nathalie Munoz and 12 more

Abstract read
In one paragraph

Article in Biotechnology for biofuels, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Metabolic Engineering ofJournal of fungi (Basel, Switzerland) · 2026
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. Metabolic engineering of terpene metabolism in lavender.Beni-Suef University journal of basic and applied sciences · 2024
    Review
  17. Article
  18. Article
  19. Article
  20. Modularly engineeringFrontiers in bioengineering and biotechnology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

James KirbyDepartment of Energy, Agile BioFoundry, Emeryville, CA, 94608, USA.
Gina M GeiselmanDepartment of Energy, Agile BioFoundry, Emeryville, CA, 94608, USA.
Junko YaegashiJoint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, CA, 94608, USA.
Joonhoon KimDepartment of Energy, Agile BioFoundry, Emeryville, CA, 94608, USA.
Xun ZhuangDepartment of Energy, Agile BioFoundry, Emeryville, CA, 94608, USA.
Mary Bao Tran-GyamfiDepartment of Energy, Agile BioFoundry, Emeryville, CA, 94608, USA.
Jan-Philip PrahlDepartment of Energy, Agile BioFoundry, Emeryville, CA, 94608, USA.
Eric R SundstromDepartment of Energy, Agile BioFoundry, Emeryville, CA, 94608, USA.
Yuqian GaoDepartment of Energy, Agile BioFoundry, Emeryville, CA, 94608, USA.
Nathalie MunozDepartment of Energy, Agile BioFoundry, Emeryville, CA, 94608, USA.
Kristin E Burnum-JohnsonDepartment of Energy, Agile BioFoundry, Emeryville, CA, 94608, USA.
Veronica T BenitesDepartment of Energy, Agile BioFoundry, Emeryville, CA, 94608, USA.
Edward E K BaidooDepartment of Energy, Agile BioFoundry, Emeryville, CA, 94608, USA.
Anna FuhrmannJoint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, CA, 94608, USA.
Katharina SeibelJoint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, CA, 94608, USA.
Bobbie-Jo M Webb-RobertsonDepartment of Energy, Agile BioFoundry, Emeryville, CA, 94608, USA.
Jeremy ZuckerDepartment of Energy, Agile BioFoundry, Emeryville, CA, 94608, USA.
Carrie D NicoraDepartment of Energy, Agile BioFoundry, Emeryville, CA, 94608, USA.
Deepti TanjoreDepartment of Energy, Agile BioFoundry, Emeryville, CA, 94608, USA.
Jon K MagnusonDepartment of Energy, Agile BioFoundry, Emeryville, CA, 94608, USA.
Jeffrey M SkerkerEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
John M GladdenDepartment of Energy, Agile BioFoundry, Emeryville, CA, 94608, USA. jmgladden@lbl.gov.

Funding

Bioenergy Technologies Office DE-AC02-05CH11231
6 · The paper itself

Abstract

backgroundMitigation of climate change requires that new routes for the production of fuels and chemicals be as oil-independent as possible. The microbial conversion of lignocellulosic feedstocks into terpene-based biofuels and bioproducts represents one such route. This work builds upon previous demonstrations that the single-celled carotenogenic basidiomycete, Rhodosporidium toruloides, is a promising host for the production of terpenes from lignocellulosic hydrolysates.

resultsThis study focuses on the optimization of production of the monoterpene 1,8-cineole and the sesquiterpene α-bisabolene in R. toruloides. The α-bisabolene titer attained in R. toruloides was found to be proportional to the copy number of the bisabolene synthase (BIS) expression cassette, which in turn influenced the expression level of several native mevalonate pathway genes. The addition of more copies of BIS under a stronger promoter resulted in production of α-bisabolene at 2.2 g/L from lignocellulosic hydrolysate in a 2-L fermenter. Production of 1,8-cineole was found to be limited by availability of the precursor geranylgeranyl pyrophosphate (GPP) and expression of an appropriate GPP synthase increased the monoterpene titer fourfold to 143 mg/L at bench scale. Targeted mevalonate pathway metabolite analysis suggested that 3-hydroxy-3-methyl-glutaryl-coenzyme A reductase (HMGR), mevalonate kinase (MK) and phosphomevalonate kinase (PMK) may be pathway bottlenecks are were therefore selected as targets for overexpression. Expression of HMGR, MK, and PMK orthologs and growth in an optimized lignocellulosic hydrolysate medium increased the 1,8-cineole titer an additional tenfold to 1.4 g/L. Expression of the same mevalonate pathway genes did not have as large an impact on α-bisabolene production, although the final titer was higher at 2.6 g/L. Furthermore, mevalonate pathway intermediates accumulated in the mevalonate-engineered strains, suggesting room for further improvement.

conclusionsThis work brings R. toruloides closer to being able to make industrially relevant quantities of terpene from lignocellulosic biomass.

Indexed as

1,8-CineoleEucalyptolIsoprenoidsMetabolic engineeringMevalonate pathwayRhodotorulaΑ-bisabolene

Identifiers

PMID33883010
PMCPMC8058980

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