Evidence map›Paper›PMID 33882912›Full record

ArticleMalaria journal2021

IFN-λ4 genetic variants influence clinical malaria episodes in a cohort of Kenyan children.

Gabriela Samayoa-Reyes, Conner Jackson, Sidney Ogolla, Katherine Sabourin, Adeola Obajemu, Arlene E Dent, Ludmilla Prokunina-Olsson, Rosemary Rochford

Open access · goldAbstract read
In one paragraph

Article in Malaria journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research · 2023
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Gabriela Samayoa-ReyesUniversity of Colorado Anschutz Medical Campus, Aurora, CO, USA.
Conner JacksonUniversity of Colorado Anschutz Medical Campus, Aurora, CO, USA.
Sidney OgollaCenter for Global Health Research, Kenya Medical Research Institute, Kisumu, Kenya.
Katherine SabourinUniversity of Colorado Anschutz Medical Campus, Aurora, CO, USA.
Adeola ObajemuLaboratory of Translational Genomics, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
Arlene E DentCenter for Global Health and Diseases, Case Western Reserve University, Cleveland, OH, USA.
Ludmilla Prokunina-OlssonLaboratory of Translational Genomics, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
Rosemary RochfordUniversity of Colorado Anschutz Medical Campus, Aurora, CO, USA. rosemary.rochford@cuanschutz.edu.ORCID http://orcid.org/0000-0002-0001-5152
University of Colorado Anschutz Medical Campus · USNational Institutes of Health · USCenter for Global Health · USKenya Medical Research Institute · KE

Funding

The synergistic contributions of EBV and malaria to the etiology of Burkitt lymphomaR01AI141531 · NIAID · UNIVERSITY OF COLORADO DENVER · PI SAMAYOA REYES, GABRIELA M · 2020 to 2024
$3.6M
Effects of Malaria on EBV Persistence in ChildrenR01CA102667 · NCI · UPSTATE MEDICAL UNIVERSITY · PI ROCHFORD, ROSEMARY · 2005 to 2014
$2.9M
B cell immunity in HIV exposed uninfected infants in KenyaR01AI098511 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI DENT, ARLENE · 2012 to 2015
$2.5M
NCI NIH HHS R01 CA102667NIAID NIH HHS R01 AI098511NIAID NIH HHS R01 AI141531NIH HHS AI098511NIH HHS AI141531NIH HHS CA102667NIH HHS D43 153707
6 · The paper itself

Abstract

backgroundInterferon (IFN)- λ4, a type III IFN, production is controlled by a dinucleotide frameshift variant (rs368234815-dG/TT) within the first exon of the IFNL4 gene. Carriers of the IFNL4-dG allele but not the IFNL4-TT allele are able to produce the IFN-λ4 protein. Patients with hepatitis C virus that do not produce the IFN-λ4 protein have higher rates of viral clearance suggesting a potential inhibitory role of IFN-λ4 in liver-tropic infections.

methodsIn this study, it was investigated whether children infected with Plasmodium falciparum, which has a well-characterized liver stage infection, would be more susceptible to clinical malaria relative to their IFNL4-rs368234815 allele. A cohort of 122 children from a malaria holoendemic region of Kenya was analysed. Episodes of clinical malaria and upper respiratory tract infections (URTIs) were determined using information collected from birth to 2 years of age. The dinucleotide frameshift variant IFNL4-rs368234815-dG/TT was genotyped using a TaqMan assay.

resultsIn this cohort, 33% of the study participants had the dG/dG genotype, 45% had the dG/TT genotype, and 22% had TT/TT genotype. The number and time to first episode of clinical malaria and URTIs with respect to the IFNL4-rs368234815 allele was evaluated. It was found that children that carried the IFNL4-rs368234815-dG allele had an increased number of clinical malaria episodes. In addition, there was a significant association between earlier age of first malaria infection with carriers of the IFNL4-dG allele (p-value: 0.021).

conclusionThe results suggest that the ability to produce IFN-λ4 negatively affects host immune protection against P. falciparum malaria in Kenyan children.

Indexed as

Genetic VariationMutationChild, PreschoolCohort StudiesFemaleHumansIncidenceInfantInfant, NewbornInterferon LambdaInterleukinsKenyaMalaria, FalciparumMalePlasmodium falciparumIFNL4 protein, humanInterferon LambdaInterleukinsIFN-λ4Innate ImmunityMalariaPlasmodium falciparumType III Interferon

Identifiers

PMID33882912
PMCPMC8058600
OpenAlexW3156297858

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.