Evidence map›Paper›PMID 33882815›Full record

ArticleBMC ecology and evolution2021

Evolution of pathogen response genes associated with increased disease susceptibility during adaptation to an extreme drought in a Brassica rapa plant population.

Niamh B O'Hara, Steven J Franks, Nolan C Kane, Silas Tittes, Joshua S Rest

Open access · goldAbstract read
In one paragraph

Article in BMC ecology and evolution, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
1.3field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 7 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Niamh B O'HaraJacobs Technion-Cornell Institute, Cornell Tech, New York, NY, 10011, USA. niamh.ohara@cornell.edu.
Steven J FranksDepartment of Biological Sciences, Fordham University, Bronx, NY, 10458, USA.
Nolan C KaneDepartment of Ecology and Evolution, The University of Colorado at Boulder, Boulder, CO, 80309, USA.
Silas TittesDepartment of Ecology and Evolution, The University of Colorado at Boulder, Boulder, CO, 80309, USA.
Joshua S RestDepartment of Ecology and Evolution, Stony Brook University, Stony Brook, NY, 11794, USA.
University of Colorado Boulder · USFordham University · USJacobs Institute · USStony Brook University · US

Funding

Fitness and Modularity of Stochastic Variation in Protein Expression LevelsR01GM108904 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI REST, JOSHUA · 2014 to 2018
$927k
National Science Foundation DEB-1142784NIGMS NIH HHS R01 GM108904
6 · The paper itself

Abstract

backgroundPathogens are key components in natural and agricultural plant systems. There is evidence of evolutionary changes in disease susceptibility as a consequence of climate change, but we know little about the underlying genetic basis of this evolution. To address this, we took advantage of a historical seed collection of a Brassica rapa population, which we previously demonstrated evolved an increase in disease susceptibility to a necrotrophic fungal pathogen following a drought.

resultsPreviously, we combined a resurrection experiment with genome-wide sequencing of 124 pooled ancestral and descendant plants. Here, using these previously generated sequence data (Franks et al. in Mol Ecol 25(15):3622-3631, 2016), we show that well-characterized necrotrophic fungal pathogen response (NFPR) genes have evolved, as indicated by changes in allele frequency, between ancestors and descendants, with several of them identified as extreme F

conclusionsOur study provides evidence that for this population, standing variation in NFPR genes is affected by natural selection related to climate change. Our results reveal potentially important candidates that may underlie trait evolution in both crops and natural systems. Additionally, this trade-off between adaptation to biotic and abiotic stresses is an example of how climate change can have diverse and unexpected consequences.

Indexed as

Brassica rapaDroughtsAcclimatizationAdaptation, PhysiologicalDisease SusceptibilityAlternaria brassicaeBrassica rapaClimate changeDroughtNecrotrophic fungal pathogen responseResurrection approach

Identifiers

PMID33882815
PMCPMC8060997
OpenAlexW3112129396

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.