Evidence map›Paper›PMID 33882349›Full record

ArticleNeuroImage2021

Minimal specifications for non-human primate MRI: Challenges in standardizing and harmonizing data collection.

Joonas A Autio, Qi Zhu, Xiaolian Li, Matthew F Glasser, Caspar M Schwiedrzik, Damien A Fair, Jan Zimmermann, Essa Yacoub, Ravi S Menon, David C Van Essen and 3 more

Abstract readMulticenter Study
In one paragraph

Article in NeuroImage, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
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  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. MEBRAINS 1.0: A new population-based macaque atlas.Imaging neuroscience (Cambridge, Mass.) · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Brain-wide functional connectivity of face patch neurons during rest.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Joonas A AutioLaboratory for Brain Connectomics Imaging, RIKEN Center for Biosystems Dynamics Research, Kobe, Japan. Electronic address: joonas.autio@riken.jp.
Qi ZhuLaboratory for Neuro- and Psychophysiology, Department of Neurosciences, KU Leuven Medical School, Leuven 3000, Belgium; Cognitive Neuroimaging Unit, INSERM, CEA, Université Paris-Saclay, NeuroSpin Center, 91191 Gif/Yvette, France.
Xiaolian LiLaboratory for Neuro- and Psychophysiology, Department of Neurosciences, KU Leuven Medical School, Leuven 3000, Belgium.
Matthew F GlasserDepartments of Radiology, Washington University School of Medicine, St. Louis, MO, USA; Departments of Neuroscience, Washington University School of Medicine, St. Louis, MO, USA.
Caspar M SchwiedrzikNeural Circuits and Cognition Lab, European Neuroscience Institute Göttingen - A Joint Initiative of the University Medical Center Göttingen and the Max Planck Society, Grisebachstraße 5, 37077 Göttingen, Germany; Perception and Plasticity Group, German Primate Center - Leibniz Institute for Primate Research, Kellnerweg 4, 37077 Göttingen, Germany.
Damien A FairCenter for Magnetic Resonance Research, Department of Radiology, University of Minnesota, Minneapolis, MN, USA.
Jan ZimmermannCenter for Magnetic Resonance Research, Department of Radiology, University of Minnesota, Minneapolis, MN, USA.
Essa YacoubCenter for Magnetic Resonance Research, Department of Radiology, University of Minnesota, Minneapolis, MN, USA.
Ravi S MenonCentre for Functional and Metabolic Mapping, Western University, London, ON, Canada.
David C Van EssenDepartments of Neuroscience, Washington University School of Medicine, St. Louis, MO, USA.
Takuya HayashiLaboratory for Brain Connectomics Imaging, RIKEN Center for Biosystems Dynamics Research, Kobe, Japan.
Brian RussDepartment of Psychiatry, New York University Langone, New York City, New York, USA; Center for the Biomedical Imaging and Neuromodulation, Nathan Kline Institute, Orangeburg, New York, USA; Department of Neuroscience, Icahn School of Medicine, Mount Sinai, New York City, New York, USA.
Wim VanduffelLaboratory for Neuro- and Psychophysiology, Department of Neurosciences, KU Leuven Medical School, Leuven 3000, Belgium; Leuven Brain Institute, KU Leuven, Leuven 3000, Belgium; Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA 02129, USA; Department of Radiology, Harvard Medical School, Boston, MA 02144, USA.

Funding

Mapping the Human Connectome: Structure, Function, and HeritabilityU54MH091657 · NIMH · WASHINGTON UNIVERSITY · PI UGURBIL, KAMIL, VAN ESSEN, DAVID C · 2010 to 2014
$34.7M
Project 5: ComputationalP50MH109429 · NIMH · NATHAN S. KLINE INSTITUTE FOR PSYCH RES · PI Robert Thomas Knight · 2017 to 2026
$25.3M
ABCD-USA Consortium: Research ProjectU01DA041148 · NIDA · OREGON HEALTH & SCIENCE UNIVERSITY · PI Damien A Fair, Rebekah S Huber · 2015 to 2026
$22.3M
Viral Innovation CoreP30DA048742 · NIDA · UNIVERSITY OF MINNESOTA · PI Mark John Thomas · 2020 to 2026
$19.0M
RECONSTRUCTIONS AND REPRESENTATIONS OF CEREBRAL CORTEXR01MH060974 · NIMH · WASHINGTON UNIVERSITY · PI VAN ESSEN, DAVID C · 1999 to 2024
$12.7M
TRD4 - Ultrahigh Field Engineering and SafetyP41EB027061 · NIBIB · UNIVERSITY OF MINNESOTA · PI Gregory John Metzger, KAMIL UGURBIL · 2019 to 2026
$11.7M
Identification of outcome-based sub-populations using deep phenotyping and precision functional mapping across ADHD and ASDR01MH096773 · NIMH · UNIVERSITY OF MINNESOTA · PI DOSENBACH, NICO, FAIR, DAMIEN A · 2012 to 2024
$9.4M
Pathophysiology-based approaches to deep brain stimulation for Parkinson's diseaseP50NS098573 · NINDS · UNIVERSITY OF MINNESOTA · PI JOHNSON, MATTHEW DOUGLAS · 2016 to 2020
$9.1M
Defining Neuronal Circuits and Cellular Processes Underlying Resting fMRI SignalsR01MH111439 · NIMH · NATHAN S. KLINE INSTITUTE FOR PSYCH RES · PI MILHAM, MICHAEL PETER, SCHROEDER, CHARLES E · 2016 to 2020
$5.1M
Brain trajectories in ADHDR01MH115357 · NIMH · OREGON HEALTH & SCIENCE UNIVERSITY · PI FAIR, DAMIEN A, NIGG, JOEL T · 2017 to 2021
$3.8M
The Neuronal Underpinnings of Non-invasive Laminar fMRIRF1MH116978 · NIMH · UNIVERSITY OF MINNESOTA · PI DEVINSKY, ORRIN, YACOUB, ESSA · 2018 to 2018
$2.9M
Mechanistic and causal basis of fMRI functional connectivity in non-human primatesRF1MH117040 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI RUDEBECK, PETER, RUSS, BRIAN E · 2018 to 2018
$2.8M
CIHR FRN-148453NIBIB NIH HHS P41 EB027061NIDA NIH HHS P30 DA048742NIDA NIH HHS U01 DA041148NIMH NIH HHS P50 MH109429NIMH NIH HHS R01 MH060974NIMH NIH HHS R01 MH096773NIMH NIH HHS R01 MH101555NIMH NIH HHS R01 MH111439NIMH NIH HHS R01 MH115357NIMH NIH HHS RF1 MH116978NIMH NIH HHS RF1 MH117040NIMH NIH HHS U54 MH091657NINDS NIH HHS P50 NS098573
6 · The paper itself

Abstract

Recent methodological advances in MRI have enabled substantial growth in neuroimaging studies of non-human primates (NHPs), while open data-sharing through the PRIME-DE initiative has increased the availability of NHP MRI data and the need for robust multi-subject multi-center analyses. Streamlined acquisition and analysis protocols would accelerate and improve these efforts. However, consensus on minimal standards for data acquisition protocols and analysis pipelines for NHP imaging remains to be established, particularly for multi-center studies. Here, we draw parallels between NHP and human neuroimaging and provide minimal guidelines for harmonizing and standardizing data acquisition. We advocate robust translation of widely used open-access toolkits that are well established for analyzing human data. We also encourage the use of validated, automated pre-processing tools for analyzing NHP data sets. These guidelines aim to refine methodological and analytical strategies for small and large-scale NHP neuroimaging data. This will improve reproducibility of results, and accelerate the convergence between NHP and human neuroimaging strategies which will ultimately benefit fundamental and translational brain science.

Indexed as

BrainAnimalsEcho-Planar ImagingFunctional NeuroimagingMacaca mulattaMagnetic Resonance ImagingNeuroimagingReproducibility of ResultsMRIMulti-siteNon-human primatePRIME-DEStandardization

Identifiers

PMID33882349
PMCPMC8594288

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.