Evidence map›Paper›PMID 33881836›Full record

ArticleACS chemical biology2021

Pyridazine Nucleobase in Triplex-Forming PNA Improves Recognition of Cytosine Interruptions of Polypurine Tracts in RNA.

Nikita Brodyagin, Ilze Kumpina, Justin Applegate, Martins Katkevics, Eriks Rozners

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. The pyridazine heterocycle in molecular recognition and drug discovery.Medicinal chemistry research : an international journal for rapid communications on design and mechanisms of action of biologically active agents · 2023
    Review
  10. Fluorobenzene Nucleobase Analogues for Triplex-Forming Peptide Nucleic Acids.Chembiochem : a European journal of chemical biology · 2022
    Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Nikita BrodyaginDepartment of Chemistry, Binghamton University, The State University of New York, Binghamton, New York 13902, United States.
Ilze KumpinaLatvian Institute of Organic Synthesis, Aizkraukles 21, Riga, LV-1006, Latvia.
Justin ApplegateDepartment of Chemistry, Binghamton University, The State University of New York, Binghamton, New York 13902, United States.
Martins KatkevicsLatvian Institute of Organic Synthesis, Aizkraukles 21, Riga, LV-1006, Latvia.ORCID 0000-0003-1547-0075
Eriks RoznersDepartment of Chemistry, Binghamton University, The State University of New York, Binghamton, New York 13902, United States.ORCID 0000-0001-7649-0040
Binghamton University · USLatvijas Organiskās Sintēzes Institūts · LV

Funding

Chemical Approaches to Control the Function of Regulatory RNAsR35GM130207 · NIGMS · STATE UNIVERSITY OF NY,BINGHAMTON · PI ERIKS ROZNERS · 2019 to 2026
$3.7M
NIGMS NIH HHS R35 GM130207
6 · The paper itself

Abstract

Sequence specific recognition of regulatory noncoding RNAs would open new possibilities for fundamental science and medicine. However, molecular recognition of such complex double-stranded RNA (dsRNA) structures remains a formidable problem. Recently, we discovered that peptide nucleic acids (PNAs) form an unusually stable and sequence-specific triple helix with dsRNA. Triplex-forming PNAs could become universal tools for recognition of noncoding dsRNAs but are limited by the requirement of polypurine tracts in target RNAs as only purines form stable Hoogsteen hydrogen bonded base triplets. Herein, we systematically surveyed simple nitrogen heterocycles P

Indexed as

Base SequenceCytosineHydrogen BondingMolecular ConformationPeptide Nucleic AcidsProtein BindingPurinesPyridazinesRNA, Double-StrandedStructure-Activity RelationshipCytosinePeptide Nucleic AcidspurinePurinesPyridazinesRNA, Double-Stranded

Identifiers

PMID33881836
PMCPMC8673316
OpenAlexW3154410564

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.