Evidence map›Paper›PMID 33881594›Full record

ArticleEuropean biophysics journal : EBJ2021

Reproducibility and accuracy of microscale thermophoresis in the NanoTemper Monolith: a multi laboratory benchmark study.

Blanca López-Méndez, Bruno Baron, Chad A Brautigam, Thomas A Jowitt, Stefan H Knauer, Stephan Uebel, Mark A Williams, Arthur Sedivy, Olga Abian, Celeste Abreu and 37 more

Erratum issuedAbstract read
In one paragraph

Article in European biophysics journal : EBJ, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

47 authors.

Blanca López-MéndezBiophysics Platform, Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, 2200, Copenhagen, Denmark.ORCID http://orcid.org/0000-0001-8541-4904
Bruno BaronMolecular Biophysics, Institut Pasteur, 25-28 Rue du Dr Roux, 75015, Paris, France.
Chad A BrautigamDepartments of Biophysics and Microbiology, UT Southwestern Medical Center, Dallas, TX, 75390, USA.ORCID http://orcid.org/0000-0001-6563-1338
Thomas A JowittBiomolecular Analysis Core Facility, University of Manchester, Oxford Rd, Manchester, M13 9PL, UK.ORCID http://orcid.org/0000-0002-4045-0933
Stefan H KnauerBiochemistry IV-Biopolymers, University of Bayreuth, Universitaetsstr. 30, 95447, Bayreuth, Germany.ORCID http://orcid.org/0000-0002-4143-0694
Stephan UebelMax Planck Institute of Biochemistry, Am Klopferspitz 18, Martinsried, 82152, Planegg, Germany.ORCID http://orcid.org/0000-0002-3726-3942
Mark A WilliamsDepartment of Biological Sciences, ISMB BiophysX Centre, Institute of Structural and Molecular Biology, Birkbeck, University of London, London, WC1E 7HX, UK.ORCID http://orcid.org/0000-0002-1645-2189
Arthur SedivyProteinTechnology, Vienna Biocenter Core Facilities GmbH, Dr. Bohr-Gasse 3, 1030, Vienna, Austria. arthur.sedivy@vbcf.ac.at.ORCID http://orcid.org/0000-0002-5729-9790
Olga AbianDepartamento de Bioquímica y Biología Molecular y Celular-Institute of Biocomputation and Physics of Complex Systems (BIFI), Instituto Aragonés de Ciencias de la Salud (IACS), Instituto de Investigación Sanitaria Aragón (IIS Aragón), Universidad de Zaragoza, C/ Mariano Esquillor S/N, 50018, Zaragoza, Spain.ORCID http://orcid.org/0000-0001-5664-1729
Celeste AbreuDepartment of Biochemistry, Faculty of Science, Charles University, Hlavova 8, 128 43, Prague, Czech Republic.ORCID http://orcid.org/0000-0002-3647-9776
Malgorzata AdamczykFaculty of Chemistry, Chair of Drug and Cosmetics Biotechnology, Warsaw University of Technology, ul. Noakowskiego 3, 00-664, Warsaw, Poland.ORCID http://orcid.org/0000-0003-3979-0364
Wojciech BalInstitute of Biochemistry and Biophysics, PAS, Pawinskiego 5a, 02-106, Warsaw, Poland.ORCID http://orcid.org/0000-0003-3780-083X
Sylvie BergerInstitut de Recherches Servier, 125, Chemin de Ronde, 78290, Croissy-sur-Seine, France.
Alexander K BuellDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads, Kgs., 2800, Lyngby, Denmark.ORCID http://orcid.org/0000-0003-1161-3622
Carlo CarolisBioMolecular Screening and Protein Technologies Unit, Centre for Genomic Regulation (CRG), Dr. Aiguader St, 88, 08003, Barcelona, Spain.
Tina DaviterDepartment of Biological Sciences, BiophysX Centre, Institute of Structural and Molecular Biology, Birkbeck, University of London, Malet Street, London, WC1E 7HX, UK.
Alexander FishDepartment of Biochemistry, Netherlands Cancer Institute, Plesmanlaan 121, 1066CX, Amsterdam, Netherlands.ORCID http://orcid.org/0000-0002-5597-1037
Maria Garcia-AlaiEMBL-Hamburg, Notkestrasse 85, 22607, Hamburg, Germany.ORCID http://orcid.org/0000-0002-5200-7816
Christian GuentherEMBL-Hamburg, Notkestrasse 85, 22607, Hamburg, Germany.
Josef HamacekCenter for Molecular Biophysics, UPR 4301 CNRS Orléans, Rue Charles Sadron, 45071, Orléans, France.ORCID http://orcid.org/0000-0003-4641-7357
Jitka HolkováGlycobiochemistry and Biomolecular Interaction and Crystallization Core Facility, CEITEC MU, Kamenice 5, 625 00, Brno, Czech Republic.
Josef HouserGlycobiochemistry and Biomolecular Interaction and Crystallization Core Facility, CEITEC MU, Kamenice 5, 625 00, Brno, Czech Republic.ORCID http://orcid.org/0000-0003-4504-3891
Chris JohnsonMRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge Biomedical Campus, Cambridge, CB2 0QH, UK.
Sharon KellyInstitute of Molecular, Cell and Systems Biology, University of Glasgow, B4-13 Joseph Black Building, G12 8QQ, Glasgow, Scotland, UK.
Andrew LeechDepartment of Biology, Bioscience Technology Facility, University of York, Wentworth Way, York, YO10 5DD, UK.ORCID http://orcid.org/0000-0001-6918-1469
Caroline MasIntegrated Structural Biology Grenoble (ISBG), UMS 3518 (CNRS-CEA-UGA-EMBL), 71 avenue des Martyrs, 38042, Grenoble Cedex 9, France.
Daumantas MatulisDepartment of Biothermodynamics and Drug Design, Life Sciences Center, Institute of Biotechnology, Vilnius University, Sauletekio StSaulėtekio 7, 10257, Vilnius, Lithuania.ORCID http://orcid.org/0000-0002-6178-6276
Stephen H McLaughlinMRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge Biomedical Campus, Cambridge, CB2 0QH, UK.
Roland MontserretInstitut de Biologie et Chimie des protéines, CNRS, Université de Lyon, 7 passage du Vercors, 69367, cedex 07 Lyon, France.ORCID http://orcid.org/0000-0002-2671-5843
Rouba NasreddineInstitut de Chimie Organique et Analytique (ICOA), CNRS FR 2708, UMR 7311, Université d'Orléans, Orléans, France.
Reine NehméInstitut de Chimie Organique et Analytique (ICOA), CNRS FR 2708, UMR 7311, Université d'Orléans, Orléans, France.ORCID http://orcid.org/0000-0002-5288-7702
Quyen NguyenInstitut de Recherches Servier, 125, Chemin de Ronde, 78290, Croissy-sur-Seine, France.
David Ortega-AlarcónInstitute of Biocomputation and Physics of Complex Systems (BIFI), Universidad de Zaragoza, C/ Mariano Esquillor S/N, 50018, Zaragoza, Spain.
Kathryn PerezBiophysics Lab, Protein Expression and Purification Core Facility, EMBL Heidelberg, Meyerhofstraße 1, 69117, Heidelberg, Germany.
Katja PircDepartment of Molecular Biology and Nanobiotechnology, National Institute of Chemistry, Hajdrihova 19, 1000, Ljubljana, Slovenia.ORCID http://orcid.org/0000-0002-1839-2044
Grzegorz PiszczekNHLBI Biophysics Core Facility, NHLBI/NIH, 50 South Dr, Bethesda, MD, 20892, USA.ORCID http://orcid.org/0000-0002-5270-3678
Marjetka PodobnikDepartment of Molecular Biology and Nanobiotechnology, National Institute of Chemistry, Hajdrihova 19, 1000, Ljubljana, Slovenia.ORCID http://orcid.org/0000-0001-6786-9737
Natalia RodrigoBioMolecular Screening and Protein Technologies Unit, Centre for Genomic Regulation (CRG), Dr. Aiguader St, 88, 08003, Barcelona, Spain.
Jasmina Rokov-PlavecDivision of Biochemistry, Department of Chemistry, Faculty of Science, University of Zagreb, Horvatovac 102a, 10000, Zagreb, Croatia.ORCID http://orcid.org/0000-0001-7885-3503
Susanne SchaeferDepartment of Biochemistry, University of Bayreuth, Universitätsstr. 30, 95447, Bayreuth, Germany.
Tim SharpeBiozentrum, University of Basel, Klingelbergstrasse 50/70, 4056, Basel, Switzerland.
June SouthallInstitute of Molecular, Cell and Systems Biology, University of Glasgow, B4-13 Joseph Black Building, G12 8QQ, Glasgow, Scotland, UK.
David StauntonDepartment of Biochemistry, University of Oxford, South Parks Rd, Oxford, OX13 5LA, UK.
Pedro TavaresMolecular Biophysics Research Laboratory, Departamento de Química, UCIBIO/Requimte, Faculdade de Ciências e Tecnologia, UNL, Campus Caparica, 2829-516, Costa da Caparica, Portugal.
Ondrej VanekDepartment of Biochemistry, Faculty of Science, Charles University, Hlavova 8, 128 43, Prague, Czech Republic.ORCID http://orcid.org/0000-0003-1190-8535
Michael WeyandDepartment of Biochemistry, University of Bayreuth, Universitätsstr. 30, 95447, Bayreuth, Germany.
Di WuNHLBI Biophysics Core Facility, NHLBI/NIH, 50 South Dr, Bethesda, MD, 20892, USA.

Funding

Medical Research Council MC_U105184326
6 · The paper itself

Abstract

Microscale thermophoresis (MST), and the closely related Temperature Related Intensity Change (TRIC), are synonyms for a recently developed measurement technique in the field of biophysics to quantify biomolecular interactions, using the (capillary-based) NanoTemper Monolith and (multiwell plate-based) Dianthus instruments. Although this technique has been extensively used within the scientific community due to its low sample consumption, ease of use, and ubiquitous applicability, MST/TRIC has not enjoyed the unambiguous acceptance from biophysicists afforded to other biophysical techniques like isothermal titration calorimetry (ITC) or surface plasmon resonance (SPR). This might be attributed to several facts, e.g., that various (not fully understood) effects are contributing to the signal, that the technique is licensed to only a single instrument developer, NanoTemper Technology, and that its reliability and reproducibility have never been tested independently and systematically. Thus, a working group of ARBRE-MOBIEU has set up a benchmark study on MST/TRIC to assess this technique as a method to characterize biomolecular interactions. Here we present the results of this study involving 32 scientific groups within Europe and two groups from the US, carrying out experiments on 40 Monolith instruments, employing a standard operation procedure and centrally prepared samples. A protein-small molecule interaction, a newly developed protein-protein interaction system and a pure dye were used as test systems. We characterized the instrument properties and evaluated instrument performance, reproducibility, the effect of different analysis tools, the influence of the experimenter during data analysis, and thus the overall reliability of this method.

Indexed as

LaboratoriesCalorimetryReproducibility of ResultsTemperatureBenchmarkInteractionK DMSTThermophoresisTRIC

Identifiers

PMID33881594
PMCPMC8519905

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