Evidence map›Paper›PMID 33880605›Full record

ArticleArchives of microbiology2021

Genome analysis provides insights into the biocontrol ability of Mitsuaria sp. strain TWR114.

Malek Marian, Takashi Fujikawa, Masafumi Shimizu

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Archives of microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Complete Genome Sequences ofMicrobiology resource announcements · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Malek MarianFaculty of Applied Biological Sciences, Gifu University, Gifu, 501-1193, Japan.ORCID http://orcid.org/0000-0001-6945-2732
Takashi FujikawaInstitute of Fruit Tree and Tea Science, National Agriculture and Food Research Organization (NARO), Tsukuba, Ibaraki, 305-8605, Japan.ORCID http://orcid.org/0000-0001-5659-0407
Masafumi ShimizuFaculty of Applied Biological Sciences, Gifu University, Gifu, 501-1193, Japan. shimizma@gifu-u.ac.jp.ORCID http://orcid.org/0000-0001-9103-1432
Gifu University · JPNational Agriculture and Food Research Organization · JP

Funding

Japan Society for the Promotion of Science, "Grant-in-Aid for Scientific Research (B) - JSPS KAKENHI" 19H02954
6 · The paper itself

Abstract

Mitsuaria sp. TWR114 is a biocontrol agent against tomato bacterial wilt (TBW). We aimed to gain genomic insights relevant to the biocontrol mechanisms and colonization ability of this strain. The draft genome size was found to be 5,632,523 bp, with a GC content of 69.5%, assembled into 1144 scaffolds. Genome annotation predicted a total of 4675 protein coding sequences (CDSs), 914 pseudogenes, 49 transfer RNAs, 3 noncoding RNAs, and 2 ribosomal RNAs. Genome analysis identified multiple CDSs associated with various pathways for the metabolism and transport of amino acids and carbohydrates, motility and chemotactic capacities, protection against stresses (oxidative, antibiotic, and phage), production of secondary metabolites, peptidases, quorum-quenching enzymes, and indole-3-acetic acid, as well as protein secretion systems and their related appendages. The genome resource will extend our understanding of the genomic features related to TWR114's biocontrol and colonization abilities and facilitate its development as a new biopesticide against TBW.

Indexed as

Biological Control AgentsGenome, BacterialBacterial ProteinsBase CompositionBurkholderialesDNA, BacterialGenomicsIndoleacetic AcidsPlant DiseasesSecondary MetabolismSolanum lycopersicumStress, PhysiologicalBacterial ProteinsBiological Control AgentsDNA, Bacterialindoleacetic acidIndoleacetic AcidsBiocontrol-related genesGenomicsPlant–bacteria interactionPlant colonizationTaxogenomics

Identifiers

PMID33880605
OpenAlexW3154817439

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.