Evidence map›Paper›PMID 33879812›Full record

ArticleScientific reports2021

The transcriptional activator of the bfp operon in EPEC (PerA) interacts with the RNA polymerase alpha subunit.

Cristina Lara-Ochoa, Fabiola González-Lara, Luis E Romero-González, Juan B Jaramillo-Rodríguez, Sergio I Vázquez-Arellano, Abraham Medrano-López, Lilia Cedillo-Ramírez, Ygnacio Martínez-Laguna, Jorge A Girón, Ernesto Pérez-Rueda and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Type IV pilin regulation: a transcriptional overview.Critical reviews in microbiology · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. The Assembly of Flagella in EnteropathogenicInternational journal of molecular sciences · 2022
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Cristina Lara-OchoaCentro de Detección Biomolecular, Benemérita Universidad Autónoma de Puebla, Puebla, Mexico. clara_ochoa@hotmail.com.
Fabiola González-LaraCentro de Detección Biomolecular, Benemérita Universidad Autónoma de Puebla, Puebla, Mexico.
Luis E Romero-GonzálezDepartamento de Microbiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, Mexico.
Juan B Jaramillo-RodríguezCentro de Detección Biomolecular, Benemérita Universidad Autónoma de Puebla, Puebla, Mexico.
Sergio I Vázquez-ArellanoCentro de Detección Biomolecular, Benemérita Universidad Autónoma de Puebla, Puebla, Mexico.
Abraham Medrano-LópezDepartamento de Microbiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, Mexico.
Lilia Cedillo-RamírezCentro de Detección Biomolecular, Benemérita Universidad Autónoma de Puebla, Puebla, Mexico.
Ygnacio Martínez-LagunaCentro de Detección Biomolecular, Benemérita Universidad Autónoma de Puebla, Puebla, Mexico.
Jorge A GirónCentro de Detección Biomolecular, Benemérita Universidad Autónoma de Puebla, Puebla, Mexico.
Ernesto Pérez-RuedaInstituto de Investigaciones en Matemáticas Aplicadas y en Sistemas, Universidad Nacional Autónoma de México, Unidad Académica Yucatán, Mérida, Mexico.
José Luis PuenteDepartamento de Microbiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, Mexico.
J Antonio IbarraLaboratorio de Genética Microbiana, Departamento de Microbiología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico City, Mexico. jaig19@gmail.com.
Benemérita Universidad Autónoma de Puebla · MXUniversidad Nacional Autónoma de México · MXInstituto Politécnico Nacional · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Enteropathogenic E. coli virulence genes are under the control of various regulators, one of which is PerA, an AraC/XylS-like regulator. PerA directly promotes its own expression and that of the bfp operon encoding the genes involved in the biogenesis of the bundle-forming pilus (BFP); it also activates PerC expression, which in turn stimulates locus of enterocyte effacement (LEE) activation through the LEE-encoded regulator Ler. Monomeric PerA directly binds to the per and bfp regulatory regions; however, it is not known whether interactions between PerA and the RNA polymerase (RNAP) are needed to activate gene transcription as has been observed for other AraC-like regulators. Results showed that PerA interacts with the alpha subunit of the RNAP polymerase and that it is necessary for the genetic and phenotypic expression of bfpA. Furthermore, an in silico analysis shows that PerA might be interacting with specific alpha subunit amino acids residues highlighting the direction of future experiments.

Indexed as

DNA-Directed RNA PolymerasesEnteropathogenic Escherichia coliEscherichia coli InfectionsEscherichia coli ProteinsOperonPromoter Regions, GeneticRepressor ProteinsTranscription FactorsVirulencebfpT protein, E coliDNA-Directed RNA PolymerasesEscherichia coli ProteinsRepressor ProteinsRNA polymerase alpha subunitTranscription Factors

Identifiers

PMID33879812
PMCPMC8058060
OpenAlexW3153218298

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.