Evidence map›Paper›PMID 33879090›Full record

Observational studyBMC medical research methodology2021

Generative adversarial networks for imputing missing data for big data clinical research.

Weinan Dong, Daniel Yee Tak Fong, Jin-Sun Yoon, Eric Yuk Fai Wan, Laura Elizabeth Bedford, Eric Ho Man Tang, Cindy Lo Kuen Lam

Registry-linked trialAbstract readObservational Study
In one paragraph

Observational study in BMC medical research methodology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03299010 (10-year Risk Prediction Models of Complications and Mortality of Diabetes Mellitus in Chinese Patients in Primary Care in Hong Kong), which is not on this map. Cited by 21 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03299010 completednot on this map

10-year Risk Prediction Models of Complications and Mortality of Diabetes Mellitus in Chinese Patients in Primary Care in Hong Kong

TypeobservationalSponsorThe University of Hong KongRan2017 to 2019Enrolled141,516ConditionsDiabetes Mellitus, Cardiovascular Diseases, Mortality, Primary Health Care
3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 2 syntheses or guidelines pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Weinan DongDepartment of Family Medicine and Primary Care, Faculty of Medicine, University of Hong Kong, Hong Kong, Hong Kong SAR, China.
Daniel Yee Tak FongSchool of Nursing, Faculty of Medicine, University of Hong Kong, Hong Kong, Hong Kong SAR, China.
Jin-Sun YoonElectrical and Computer Engineering Department, University of California, Los Angeles, CA, USA.
Eric Yuk Fai WanDepartment of Family Medicine and Primary Care, Faculty of Medicine, University of Hong Kong, Hong Kong, Hong Kong SAR, China. yfwan@hku.hk.
Laura Elizabeth BedfordDepartment of Family Medicine and Primary Care, Faculty of Medicine, University of Hong Kong, Hong Kong, Hong Kong SAR, China.
Eric Ho Man TangDepartment of Family Medicine and Primary Care, Faculty of Medicine, University of Hong Kong, Hong Kong, Hong Kong SAR, China.
Cindy Lo Kuen LamDepartment of Family Medicine and Primary Care, Faculty of Medicine, University of Hong Kong, Hong Kong, Hong Kong SAR, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMissing data is a pervasive problem in clinical research. Generative adversarial imputation nets (GAIN), a novel machine learning data imputation approach, has the potential to substitute missing data accurately and efficiently but has not yet been evaluated in empirical big clinical datasets.

objectivesThis study aimed to evaluate the accuracy of GAIN in imputing missing values in large real-world clinical datasets with mixed-type variables. The computation efficiency of GAIN was also evaluated. The performance of GAIN was compared with other commonly used methods, MICE and missForest.

methodsTwo real world clinical datasets were used. The first was that of a cohort study on the long-term outcomes of patients with diabetes (50,000 complete cases), and the second was of a cohort study on the effectiveness of a risk assessment and management programme for patients with hypertension (10,000 complete cases). Missing data (missing at random) to independent variables were simulated at different missingness rates (20, 50%). The normalized root mean square error (NRMSE) between imputed values and real values for continuous variables and the proportion of falsely classified (PFC) for categorical variables were used to measure imputation accuracy. Computation time per imputation for each method was recorded. The differences in accuracy of different imputation methods were compared using ANOVA or non-parametric test.

resultsBoth missForest and GAIN were more accurate than MICE. GAIN showed similar accuracy as missForest when the simulated missingness rate was 20%, but was more accurate when the simulated missingness rate was 50%. GAIN was the most accurate for the imputation of skewed continuous and imbalanced categorical variables at both missingness rates. GAIN had a much higher computation speed (32 min on PC) comparing to that of missForest (1300 min) when the sample size is 50,000.

conclusionGAIN showed better accuracy as an imputation method for missing data in large real-world clinical datasets compared to MICE and missForest, and was more resistant to high missingness rate (50%). The high computation speed is an added advantage of GAIN in big clinical data research. It holds potential as an accurate and efficient method for missing data imputation in future big data clinical research.

trial registrationClinicalTrials.gov ID: NCT03299010 ; Unique Protocol ID: HKUCTR-2232.

Indexed as

Big DataResearch DesignCohort StudiesHumansMachine LearningBig dataClinical researchGenerative adversarial networkMachine learningMissing data imputation

Identifiers

PMID33879090
PMCPMC8059005

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.