Evidence map›Paper›PMID 33875885›Full record

ArticleNature methods2021

Critical assessment of protein intrinsic disorder prediction.

Marco Necci, Damiano Piovesan, CAID Predictors, DisProt Curators, Silvio C E Tosatto

Abstract read
In one paragraph

Article in Nature methods, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 191 papers.

0numbers the graph read from it
0cells of the map it votes in
191citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

191 citing papers in PubMed.

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  14. Pathogenicity Prediction of Missense Variations in Hereditary Cancer Genes.International journal of molecular sciences · 2026
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131 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Marco Necci *Department of Biomedical Sciences, University of Padua, Padua, Italy.ORCID http://orcid.org/0000-0001-9377-482X
Damiano Piovesan *Department of Biomedical Sciences, University of Padua, Padua, Italy.ORCID http://orcid.org/0000-0001-8210-2390
CAID Predictors
DisProt Curators
Silvio C E TosattoDepartment of Biomedical Sciences, University of Padua, Padua, Italy. silvio.tosatto@unipd.it.ORCID http://orcid.org/0000-0003-4525-7793

Funding

New Computational Methods for Data-driven Protein Structure PredictionR01GM089753 · NIGMS · TOYOTA TECHNOLOGICAL INSTITUTE / CHICAGO · PI XU, JINBO · 2010 to 2023
$3.8M
NIGMS NIH HHS R01 GM089753
6 · The paper itself

Abstract

Intrinsically disordered proteins, defying the traditional protein structure-function paradigm, are a challenge to study experimentally. Because a large part of our knowledge rests on computational predictions, it is crucial that their accuracy is high. The Critical Assessment of protein Intrinsic Disorder prediction (CAID) experiment was established as a community-based blind test to determine the state of the art in prediction of intrinsically disordered regions and the subset of residues involved in binding. A total of 43 methods were evaluated on a dataset of 646 proteins from DisProt. The best methods use deep learning techniques and notably outperform physicochemical methods. The top disorder predictor has F

Indexed as

Computational BiologyAmino Acid SequenceDatabases, ProteinIntrinsically Disordered ProteinsProtein BindingProtein ConformationProtein FoldingSoftwareIntrinsically Disordered Proteins

Identifiers

PMID33875885
PMCPMC8105172

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.