Evidence map›Paper›PMID 33875673›Full record

ArticleScientific reports2021

Metagenomic shotgun sequencing reveals host species as an important driver of virome composition in mosquitoes.

Panpim Thongsripong, James Angus Chandler, Pattamaporn Kittayapong, Bruce A Wilcox, Durrell D Kapan, Shannon N Bennett

Abstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Fungal microbiota diversity inWellcome open research · 2026
    Pooled it
  2. Vector competence acrossJournal of virology · 2026
    Review
  3. Article
  4. Article
  5. Integrating metagenomics and metatranscriptomics intoThe Journal of general virology · 2026
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. RNA sequencing analysis of viromes ofProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Panpim Thongsripong *Department of Microbiology, Institute for Biodiversity Science and Sustainability, California Academy of Sciences, San Francisco, CA, USA. pthongsripong@calacademy.org.
James Angus Chandler *Department of Microbiology, Institute for Biodiversity Science and Sustainability, California Academy of Sciences, San Francisco, CA, USA.
Pattamaporn KittayapongCenter of Excellence for Vectors and Vector-Borne Diseases, Faculty of Science, Mahidol University At Salaya, Nakhon Pathom, Thailand.
Bruce A WilcoxGlobal Health Group International, ASEAN Institute for Health Development, Mahidol University At Salaya, Nakhon Pathom, Thailand.
Durrell D KapanDepartment of Entomology and Center for Comparative Genomics, Institute for Biodiversity Sciences and Sustainability, California Academy of Sciences, San Francisco, CA, USA.
Shannon N BennettDepartment of Microbiology, Institute for Biodiversity Science and Sustainability, California Academy of Sciences, San Francisco, CA, USA.

Funding

Vaccines and Diagnostics TrialsU54AI065359 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI BARBOUR, ALAN G. · 2005 to 2013
$88.8M
T Cell Responses Following DENV Natural Infections and Live-Attenuated Dengue Virus VaccinationP01AI106695 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI Aravinda M. DeSilva · 2015 to 2026
$34.1M
UHI COBRE: P3: GROUP A STREPT IN RELATION TO ACUTE RHEUMATIC FEVER IN HAWAIIP20RR018727 · NCRR · UNIVERSITY OF HAWAII AT MANOA · PI YANAGIHARA, RICHARD · 2003 to 2011
$13.8M
American Asian Centers for Arbovirus Research and Enhanced Surveillance (A2CARES)U01AI151788 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI Josefina Coloma, Eva Harris · 2020 to 2026
$9.6M
NCRR NIH HHS P20 RR018727NIAID NIH HHS P01 AI106695NIAID NIH HHS U01 AI151788NIAID NIH HHS U54 AI065359
6 · The paper itself

Abstract

High-throughput nucleic acid sequencing has greatly accelerated the discovery of viruses in the environment. Mosquitoes, because of their public health importance, are among those organisms whose viromes are being intensively characterized. Despite the deluge of sequence information, our understanding of the major drivers influencing the ecology of mosquito viromes remains limited. Using methods to increase the relative proportion of microbial RNA coupled with RNA-seq we characterize RNA viruses and other symbionts of three mosquito species collected along a rural to urban habitat gradient in Thailand. The full factorial study design allows us to explicitly investigate the relative importance of host species and habitat in structuring viral communities. We found that the pattern of virus presence was defined primarily by host species rather than by geographic locations or habitats. Our result suggests that insect-associated viruses display relatively narrow host ranges but are capable of spreading through a mosquito population at the geographical scale of our study. We also detected various single-celled and multicellular microorganisms such as bacteria, alveolates, fungi, and nematodes. Our study emphasizes the importance of including ecological information in viromic studies in order to gain further insights into viral ecology in systems where host specificity is driving both viral ecology and evolution.

Indexed as

Genome, ViralMetagenomeViromeAedesAnimalsCulexHigh-Throughput Nucleotide SequencingHost SpecificityMosquito VectorsPhylogenyRNA-SeqRNA VirusesThailand

Identifiers

PMID33875673
PMCPMC8055903

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.