Evidence map›Paper›PMID 33875471›Full record

ArticleInfection and immunity2021

Dynamic Pneumococcal Genetic Adaptations Support Bacterial Growth and Inflammation during Coinfection with Influenza.

Amanda P Smith, Lindey C Lane, Tim van Opijnen, Stacie Woolard, Robert Carter, Amy Iverson, Corinna Burnham, Peter Vogel, Dana Roeber, Gabrielle Hochu and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Infection and immunity, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Amanda P SmithDepartment of Pediatrics, University of Tennessee Health Science Center, Memphis, Tennessee, USA.
Lindey C LaneDepartment of Pediatrics, University of Tennessee Health Science Center, Memphis, Tennessee, USA.
Tim van OpijnenDepartment of Biology, Boston College, Chestnut Hill, Massachusetts, USA.
Stacie WoolardDepartment of Flow Cytometry, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Robert CarterDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Amy IversonDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Corinna BurnhamDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Peter VogelDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Dana RoeberThe Hartwell Center, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Gabrielle HochuDepartment of Pediatrics, University of Tennessee Health Science Center, Memphis, Tennessee, USA.
Michael D L JohnsonDepartment of Immunobiology, University of Arizona, Tucson, Arizona, USA.
Jonathan A McCullersDepartment of Pediatrics, University of Tennessee Health Science Center, Memphis, Tennessee, USA.
Jason RoschDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Amber M SmithDepartment of Pediatrics, University of Tennessee Health Science Center, Memphis, Tennessee, USA.
St. Jude Children's Research Hospital · USUniversity of Tennessee Health Science Center · USBoston College · USUniversity of Arizona · US

Funding

Predicting the emergence of antibiotic resistance through multi-omics approaches and Immune System-surveillanU01AI124302 · NIAID · BOSTON COLLEGE · PI BENTO, JOSE, COOPER, VAUGHN · 2016 to 2020
$10.2M
PROFESSIONAL ONCOLOGY EDUCATION PROGRAMR25CA023944 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI SUZANNE A. GRONEMEYER · 1986 to 2026
$8.3M
Predictive Modeling of Influenza-Pneumococcal CoinfectionR01AI139088 · NIAID · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI SMITH, AMBER M · 2018 to 2022
$2.1M
The bacterial response to antibiotics and the evolution of antibiotic resistanceR01AI110724 · NIAID · BOSTON COLLEGE · PI VAN OPIJNEN, TIM · 2015 to 2019
$2.0M
Quantifying and Validating Immune Response Dynamics for Influenza and Viral-Bacterial PneumoniasR56AI125324 · NIAID · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI SMITH, AMBER M · 2016 to 2016
$454k
Predicting species-wide virulence for a bacterial pathogen with a large pan-genomeR21AI117247 · NIAID · BOSTON COLLEGE · PI VAN OPIJNEN, TIM · 2016 to 2017
$430k
Bacterial virulence factors contributing to virus-associated pneumoniasK25AI100946 · NIAID · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI SMITH, AMBER M · 2012 to 2016
$425k
NCI NIH HHS R25 CA023944NIAID NIH HHS K25 AI100946NIAID NIH HHS R01 AI110724NIAID NIH HHS R01 AI139088NIAID NIH HHS R21 AI117247NIAID NIH HHS R56 AI125324NIAID NIH HHS U01 AI124302
6 · The paper itself

Abstract

Streptococcus pneumoniae (pneumococcus) is one of the primary bacterial pathogens that complicates influenza virus infections. These bacterial coinfections increase influenza-associated morbidity and mortality through a number of immunological and viral-mediated mechanisms, but the specific bacterial genes that contribute to postinfluenza pathogenicity are not known. Here, we used genome-wide transposon mutagenesis (Tn-Seq) to reveal bacterial genes that confer improved fitness in influenza virus-infected hosts. The majority of the 32 genes identified are involved in bacterial metabolism, including nucleotide biosynthesis, amino acid biosynthesis, protein translation, and membrane transport. We generated mutants with single-gene deletions (SGD) of five of the genes identified, SPD1414, SPD2047 (

Indexed as

CoinfectionGenetic FitnessHost-Pathogen InteractionsInfluenza A virusBacterial ProteinsCytokinesHumansInflammation MediatorsInfluenza, HumanLeukocytesMutationPneumococcal InfectionsStreptococcus pneumoniaeBacterial ProteinsCytokinesInflammation Mediatorsgenetic adaptationimmune responseinfluenza virusmetabolismpathogenesispneumococcus

Identifiers

PMID33875471
PMCPMC8208518
OpenAlexW3156001970

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.