Evidence map›Paper›PMID 33870472›Full record

ArticleJournal of biomolecular NMR2021

FID-Net: A versatile deep neural network architecture for NMR spectral reconstruction and virtual decoupling.

Gogulan Karunanithy, D Flemming Hansen

Open access · hybridAbstract read
In one paragraph

Article in Journal of biomolecular NMR, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
6.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 76 citations in OpenAlex.

  1. The perspective of artificial intelligence for NMR.Magnetic resonance letters · 2027
    Review
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  5. Deep Learning Assisted Proton Pure Shift NMR Spectroscopy.Journal of the American Chemical Society · 2026
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  19. Fast Pure Shift NMR Spectroscopy Using Attention-Assisted Deep Neural Network.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Gogulan KarunanithyDepartment of Structural and Molecular Biology, Division of Biosciences, University College London, London, WC1E 6BT, UK.
D Flemming HansenDepartment of Structural and Molecular Biology, Division of Biosciences, University College London, London, WC1E 6BT, UK. d.hansen@ucl.ac.uk.ORCID http://orcid.org/0000-0003-0891-220X
Institute of Structural and Molecular Biology · GB

Funding

Biotechnology and Biological Sciences Research Council BB/R000255/1Biotechnology and Biological Sciences Research Council BB/T011831/1Medical Research Council MC_U117533887Wellcome TrustWellcome Trust 101569/z/13/z
6 · The paper itself

Abstract

In recent years, the transformative potential of deep neural networks (DNNs) for analysing and interpreting NMR data has clearly been recognised. However, most applications of DNNs in NMR to date either struggle to outperform existing methodologies or are limited in scope to a narrow range of data that closely resemble the data that the network was trained on. These limitations have prevented a widescale uptake of DNNs in NMR. Addressing this, we introduce FID-Net, a deep neural network architecture inspired by WaveNet, for performing analyses on time domain NMR data. We first demonstrate the effectiveness of this architecture in reconstructing non-uniformly sampled (NUS) biomolecular NMR spectra. It is shown that a single network is able to reconstruct a diverse range of 2D NUS spectra that have been obtained with arbitrary sampling schedules, with a range of sweep widths, and a variety of other acquisition parameters. The performance of the trained FID-Net in this case exceeds or matches existing methods currently used for the reconstruction of NUS NMR spectra. Secondly, we present a network based on the FID-Net architecture that can efficiently virtually decouple

Indexed as

Neural Networks, ComputerAlgorithmsComputational BiologyDeep LearningHistone DeacetylasesMagnetic Resonance ImagingMuramidaseNuclear Magnetic Resonance, Biomolecularsrc Homology DomainsHistone DeacetylasesMuramidaseDeep learningNMRNon-uniform samplingSpectral reconstructionVirtual decoupling

Identifiers

PMID33870472
PMCPMC8131344
OpenAlexW3114720030

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.