Evidence map›Paper›PMID 33870470›Full record

ArticleArchives of virology2021

Sequence diversity and evolution of a group of iflaviruses associated with ticks.

Romain Daveu, Caroline Hervet, Louane Sigrist, Davide Sassera, Aaron Jex, Karine Labadie, Jean-Marc Aury, Olivier Plantard, Claude Rispe

Abstract read
In one paragraph

Article in Archives of virology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Differential susceptibility of geographically distinctEmerging microbes & infections · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Romain DaveuINRAE, Oniris, BIOEPAR, Nantes, France.
Caroline HervetINRAE, Oniris, BIOEPAR, Nantes, France.
Louane SigristINRAE, Oniris, BIOEPAR, Nantes, France.
Davide SasseraDepartment of Biology and Biotechnology "L. Spallanzani", University of Pavia, Pavia, Italy.
Aaron JexPopulation Health and Immunity Division, Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, 3052, Australia.
Karine LabadieGenoscope, Institut de biologie François-Jacob, Commissariat à l'Energie Atomique (CEA), Université Paris-Saclay, Evry, France.
Jean-Marc AuryGénomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057, Evry, France.
Olivier PlantardINRAE, Oniris, BIOEPAR, Nantes, France.
Claude RispeINRAE, Oniris, BIOEPAR, Nantes, France. claude.rispe@inrae.fr.ORCID http://orcid.org/0000-0002-9489-5719

Funding

ANR 10-INBS-09-08IFCE XenobiotickMIUR Dipartimenti di Eccellenza Program 2018-2022
6 · The paper itself

Abstract

We studied a group of tick-associated viruses with characteristics of members of the family Iflaviridae, a family of viruses frequently found in arthropods. Our aim was to gain insight into the evolutionary dynamics of this group of viruses, which may be linked to the biology of ticks. We explored assembled RNA-Seq data sets for different species of ticks. We identified members of five different iflavirus species, four of them novel, and discovered nine new genome sequences, including variants. Five variants represented a virus species associated with Ixodes ricinus. Unexpectedly, a sequence found in the Ixodes scapularis cell line ISE6 was nearly identical to the sequences of I. ricinus variants, suggesting a contamination of this cell line by I. ricinus material. Analysing patterns of substitutions between these variants, we detected a strong excess of synonymous mutations, suggesting evolution under strong positive selection. The phylogenies of the viruses and of their tick hosts were not congruent, suggesting recurrent host changes across tick genera during their evolution. Overall, our work constitutes a step in the understanding of the interactions between this family of viruses and ticks.

Indexed as

AnimalsBiological EvolutionCell LineGenome, ViralMutationPhylogenyTicksViruses

Identifiers

PMID33870470
PMCPMC8195936

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.