Evidence map›Paper›PMID 33868547›Full record

ArticleBayesian analysis2020

Flexible Bayesian Dynamic Modeling of Correlation and Covariance Matrices.

Shiwei Lan, Andrew Holbrook, Gabriel A Elias, Norbert J Fortin, Hernando Ombao, Babak Shahbaba

Abstract read
In one paragraph

Article in Bayesian analysis, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Time-varying functional connectivity as Wishart processes.Imaging neuroscience (Cambridge, Mass.) · 2024
    Article
  2. Article
  3. Modeling Dynamic Functional Connectivity with Latent Factor Gaussian Processes.Advances in neural information processing systems · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Shiwei LanSchool of Mathematical and Statistical Sciences, Arizona State University, Tempe, AZ 85287.
Andrew HolbrookDavid Geffen School of Medicine, University of California-Los Angeles, Los Angeles, CA 90095.
Gabriel A EliasCenter for the Neurobiology of Learning and Memory, Department of Neurobiology and Behavior, University of California-Irvine, Irvine, CA 92697.
Norbert J FortinCenter for the Neurobiology of Learning and Memory, Department of Neurobiology and Behavior, University of California-Irvine, Irvine, CA 92697.
Hernando OmbaoStatistics Program, King Abdullah University of Science and Technology, Thuwal 23955, Saudi Arabia.
Babak ShahbabaDepartment of Statistics, University of California-Irvine, Irvine, CA 92697.

Funding

Training in the Neurobiology of Aging and Alzheimers DiseaseT32AG000096 · NIA · UNIVERSITY OF CALIFORNIA-IRVINE · PI VIVEK SWARUP, Craig E Stark · 1985 to 2026
$9.6M
NIDCD T32 Interdisciplinary Training Program in Hearing ResearchT32DC010775 · NIDCD · UNIVERSITY OF CALIFORNIA-IRVINE · PI Karina S Cramer, Raju Metherate · 2010 to 2026
$3.5M
Scalable Bayesian Stochastic Process Models for Neural Data AnalysisR01MH115697 · NIMH · UNIVERSITY OF CALIFORNIA-IRVINE · PI SHAHBABA, BABAK · 2018 to 2022
$1.7M
NIA NIH HHS T32 AG000096NIDCD NIH HHS T32 DC010775NIMH NIH HHS R01 MH115697
6 · The paper itself

Abstract

Modeling correlation (and covariance) matrices can be challenging due to the positive-definiteness constraint and potential high-dimensionality. Our approach is to decompose the covariance matrix into the correlation and variance matrices and propose a novel Bayesian framework based on modeling the correlations as products of unit vectors. By specifying a wide range of distributions on a sphere (e.g. the squared-Dirichlet distribution), the proposed approach induces flexible prior distributions for covariance matrices (that go beyond the commonly used inverse-Wishart prior). For modeling real-life spatio-temporal processes with complex dependence structures, we extend our method to dynamic cases and introduce unit-vector Gaussian process priors in order to capture the evolution of correlation among components of a multivariate time series. To handle the intractability of the resulting posterior, we introduce the adaptive Δ-Spherical Hamiltonian Monte Carlo. We demonstrate the validity and flexibility of our proposed framework in a simulation study of periodic processes and an analysis of rat's local field potential activity in a complex sequence memory task.

Indexed as

dynamic covariance modelinggeometric methodsposterior contractionspatio-temporal modelsΔ-Spherical Hamiltonian Monte Carlo

Identifiers

PMID33868547
PMCPMC8048134

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.