Evidence map›Paper›PMID 33868302›Full record

ArticleFrontiers in immunology2021

VectorMOD: Method for Bottom-Up Proteomic Characterization of rAAV Capsid Post-Translational Modifications and Vector Impurities.

Neil G Rumachik, Stacy A Malaker, Nicole K Paulk

Abstract read
In one paragraph

Article in Frontiers in immunology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Glycoproteins in Viruses.Methods in molecular biology (Clifton, N.J.) · 2025
    Review
  4. Review
  5. Glycosylation of recombinant adeno-associated virus serotype 6.Molecular therapy. Methods & clinical development · 2024
    Article
  6. Article
  7. AAV vectors: The Rubik's cube of human gene therapy.Molecular therapy : the journal of the American Society of Gene Therapy · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Neil G RumachikIon Chromatography and Sample Preparation, Thermo Fisher Scientific, Sunnyvale, CA, United States.
Stacy A MalakerDepartment of Chemistry, Yale University, New Haven, CT, United States.
Nicole K PaulkDepartment of Biochemistry & Biophysics, University of California San Francisco, San Francisco, CA, United States.

Funding

Transcriptional Networks During Cardiac DifferentiationP01HL089707 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI SRIVASTAVA, DEEPAK · 2008 to 2017
$20.4M
JAX-Gladstone, SCGE Disease Models Studies SupplementU01ES032673 · NIEHS · J. DAVID GLADSTONE INSTITUTES · PI CONKLIN, BRUCE R · 2020 to 2022
$2.4M
Overcoming sexually dimorphic barriers to viral gene therapy for treating genetic liver diseases.K01DK107607 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PAULK, NICOLE K · 2016 to 2020
$782k
Human microtissues for in situ detection and functional measurement of adverse consequences caused by genome editingU01HL145795 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI MCDEVITT, TODD C · 2018 to 2018
$742k
NHLBI NIH HHS P01 HL089707NHLBI NIH HHS U01 HL145795NIDDK NIH HHS K01 DK107607NIEHS NIH HHS U01 ES032673
6 · The paper itself

Abstract

Progress in recombinant AAV gene therapy product and process development has advanced our understanding of the basic biology of this critical delivery vector. The discovery of rAAV capsid post-translational modifications (PTMs) has spurred interest in the field for detailed rAAV-specific methods for vector lot characterization by mass spectrometry given the unique challenges presented by this viral macromolecular complex. Recent concerns regarding immunogenic responses to systemically administered rAAV at high doses has highlighted the need for investigators to catalog and track potentially immunogenic vector lot components including capsid PTMs and PTMs on host cell protein impurities. Here we present a simple step-by-step guide for academic rAAV laboratories and Chemistry, Manufacturing and Control (CMC) groups in industry to perform an in-house or outsourced bottom-up mass spectrometry workflow to characterize capsid PTMs and process impurities.

Indexed as

Gene Expression Regulation, ViralGenetic EngineeringProtein Processing, Post-TranslationalCapsid ProteinsChromatography, LiquidDependovirusGenetic VectorsGlycosylationHumansPolysaccharidesProteomicsTandem Mass SpectrometryCapsid ProteinsPolysaccharidesAAV (adeno-associated virus)adverse drug reactionbottom-up approachglycosylationimmunogenicitymass spectrometry - LC-MS/MSproteomicsPTM (post-translational modification)

Identifiers

PMID33868302
PMCPMC8047074

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.