Evidence map›Paper›PMID 33864376›Full record

ArticleHuman molecular genetics2021

Rare deleterious de novo missense variants in Rnf2/Ring2 are associated with a neurodevelopmental disorder with unique clinical features.

Xi Luo, Kelly Schoch, Sharayu V Jangam, Venkata Hemanjani Bhavana, Hillary K Graves, Sujay Kansagra, Joan M Jasien, Nicholas Stong, Boris Keren, Cyril Mignot and 6 more

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in Human molecular genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02450851 (Clinical and Genetic Evaluation of Patients With Undiagnosed Disorders Through the Undiagnosed Diseases Network), which is not on this map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02450851 recruitingnot on this map

Clinical and Genetic Evaluation of Patients With Undiagnosed Disorders Through the Undiagnosed Diseases Network

TypeobservationalSponsorNational Human Genome Research Institute (NHGRI)Ran2015 to 2028Enrolled20,000ConditionsGenetic Disease
3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
  2. Article
  3. Research square · 2025
    Article
  4. De novo variants in RYBP are associated with a severe neurodevelopmental disorder and congenital anomalies.Genetics in medicine : official journal of the American College of Medical Genetics · 2025
    Article
  5. Article
  6. Loss-of-function in RBBP5 results in a syndromic neurodevelopmental disorder associated with microcephaly.Genetics in medicine : official journal of the American College of Medical Genetics · 2024
    Article
  7. Article
  8. Review
  9. Review
  10. Review
  11. Article
  12. Article
  13. Dominant-negative variants in CBX1 cause a neurodevelopmental disorder.Genetics in medicine : official journal of the American College of Medical Genetics · 2023
    Article
  14. A concurrent dual analysis of genomic data augments diagnoses: Experiences of 2 clinical sites in the Undiagnosed Diseases Network.Genetics in medicine : official journal of the American College of Medical Genetics · 2023
    Article
  15. Article
  16. Review
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 2 countries.

Xi LuoDepartment of Molecular and Human Genetics, Baylor College of Medicine (BCM), Houston, TX 77030, USA.
Kelly SchochDivision of Medical Genetics, Department of Pediatrics, Duke Health, Durham, NC 27710, USA.
Sharayu V JangamDepartment of Molecular and Human Genetics, Baylor College of Medicine (BCM), Houston, TX 77030, USA.
Venkata Hemanjani BhavanaDepartment of Molecular and Human Genetics, Baylor College of Medicine (BCM), Houston, TX 77030, USA.
Hillary K GravesDepartment of Molecular and Human Genetics, Baylor College of Medicine (BCM), Houston, TX 77030, USA.
Sujay KansagraDivision of Pediatric Neurology, Department of Pediatrics, Duke Health, Durham, NC 27710, USA.
Joan M JasienDivision of Pediatric Neurology, Department of Pediatrics, Duke Health, Durham, NC 27710, USA.
Nicholas StongInstitute for Genomic Medicine, Columbia University, New York, NY 10032, USA.
Boris KerenDépartement de Génétique, Hospitalier Pitié-Salpêtrière, APHP, Paris 75013, France.
Cyril MignotSorbonne Université, Paris 75006, France.
Claudia RavelliSorbonne Université, Paris 75006, France.
Undiagnosed Diseases Network
Hugo J BellenDepartment of Molecular and Human Genetics, Baylor College of Medicine (BCM), Houston, TX 77030, USA.
Michael F WanglerDepartment of Molecular and Human Genetics, Baylor College of Medicine (BCM), Houston, TX 77030, USA.
Vandana ShashiDivision of Medical Genetics, Department of Pediatrics, Duke Health, Durham, NC 27710, USA.
Shinya YamamotoDepartment of Molecular and Human Genetics, Baylor College of Medicine (BCM), Houston, TX 77030, USA.
Baylor College of Medicine · USSorbonne Université · FRDuke University Health System · USHoward Hughes Medical Institute · USColumbia University · USDuke Medical Center · US

Funding

An integrated and diverse genomic medicine program for undiagnosed diseasesU01HG007672 · NHGRI · DUKE UNIVERSITY · PI SHASHI, VANDANA · 2014 to 2022
$13.4M
Preclinical and Clincial OutcomesP50HD103555 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI MIRJANA MALETIC-SAVATIC · 2020 to 2026
$9.9M
Zebrafish CoreU54NS093793 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI BELLEN, HUGO J · 2015 to 2022
$7.5M
Expansion and characterization of the Drosophila Toolkit to study SARS-CoV-2R24OD022005 · OD · BAYLOR COLLEGE OF MEDICINE · PI BELLEN, HUGO J · 2016 to 2023
$7.4M
NHGRI NIH HHS U01 HG007672NICHD NIH HHS P50 HD103555NIH HHS R24 OD022005NINDS NIH HHS U54 NS093793
6 · The paper itself

Abstract

The Polycomb group (PcG) gene RNF2 (RING2) encodes a catalytic subunit of the Polycomb repressive complex 1 (PRC1), an evolutionarily conserved machinery that post-translationally modifies chromatin to maintain epigenetic transcriptional repressive states of target genes including Hox genes. Here, we describe two individuals, each with rare de novo missense variants in RNF2. Their phenotypes include intrauterine growth retardation, severe intellectual disabilities, behavioral problems, seizures, feeding difficulties and dysmorphic features. Population genomics data suggest that RNF2 is highly constrained for loss-of-function (LoF) and missense variants, and both p.R70H and p.S82R variants have not been reported to date. Structural analyses of the two alleles indicate that these changes likely impact the interaction between RNF2 and BMI1, another PRC1 subunit or its substrate Histone H2A, respectively. Finally, we provide functional data in Drosophila that these two missense variants behave as LoF alleles in vivo. The evidence provide support for deleterious alleles in RNF2 being associated with a new and recognizable genetic disorder. This tentative gene-disease association in addition to the 12 previously identified disorders caused by PcG genes attests to the importance of these chromatin regulators in Mendelian disorders.

Indexed as

Neurodevelopmental DisordersPolycomb Repressive Complex 1Genes, HomeoboxHistonesHumansPolycomb-Group ProteinsHistonesPolycomb-Group ProteinsPolycomb Repressive Complex 1RNF2 protein, human

Identifiers

PMID33864376
PMCPMC8255132
OpenAlexW3156822182

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.