Evidence map›Paper›PMID 33864101›Full record

ArticleEuropean biophysics journal : EBJ2021

A multi-laboratory benchmark study of isothermal titration calorimetry (ITC) using Ca

Adrian Velazquez-Campoy, Bárbara Claro, Olga Abian, Jonas Höring, Louis Bourlon, Rafael Claveria-Gimeno, Eric Ennifar, Patrick England, Jonathan Brad Chaires, Di Wu and 7 more

Abstract read
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In one paragraph

Article in European biophysics journal : EBJ, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 9 institutions in 6 countries.

Adrian Velazquez-CampoyInstitute of Biocomputation and Physics of Complex Systems (BIFI), Joint Units IQFR-CSIC-BIFI, and GBsC-CSIC-BIFI, Department of Biochemistry and Molecular and Cell Biology, Universidad de Zaragoza, Zaragoza, Spain. adrianvc@unizar.es.ORCID http://orcid.org/0000-0001-5702-4538
Bárbara ClaroCIQUP, Department of Chemistry and Biochemistry, Faculty of Sciences, University of Porto, Porto, Portugal.ORCID http://orcid.org/0000-0003-2225-8662
Olga AbianInstitute of Biocomputation and Physics of Complex Systems (BIFI), Joint Units IQFR-CSIC-BIFI, and GBsC-CSIC-BIFI, Department of Biochemistry and Molecular and Cell Biology, Universidad de Zaragoza, Zaragoza, Spain.ORCID http://orcid.org/0000-0001-5664-1729
Jonas HöringMolecular Biophysics, Technische Universität Kaiserslautern (TUK), Erwin-Schrödinger-Str. 13, 67663, Kaiserslautern, Germany.ORCID http://orcid.org/0000-0002-4102-3482
Louis BourlonPlate-Forme de Biophysique Moléculaire, Institut Pasteur, Paris, France.
Rafael Claveria-GimenoInstitute of Biocomputation and Physics of Complex Systems (BIFI), Joint Units IQFR-CSIC-BIFI, and GBsC-CSIC-BIFI, Department of Biochemistry and Molecular and Cell Biology, Universidad de Zaragoza, Zaragoza, Spain.ORCID http://orcid.org/0000-0002-0245-292X
Eric EnnifarArchitecture Et Réactivité de L'ARN, CNRS UPR 9002, Institut de Biologie Moléculaire et Cellulaire, Université de Strasbourg, 67000, Strasbourg, France.ORCID http://orcid.org/0000-0002-5076-846X
Patrick EnglandPlate-Forme de Biophysique Moléculaire, Institut Pasteur, Paris, France.ORCID http://orcid.org/0000-0001-6410-5918
Jonathan Brad ChairesJames Graham Brown Cancer Center, University of Louisville, Louisville, KY, 20202, USA.ORCID http://orcid.org/0000-0001-5477-945X
Di WuBiophysics Core Facility, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, 20892, USA.ORCID http://orcid.org/0000-0002-3440-1860
Grzegorz PiszczekBiophysics Core Facility, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, 20892, USA.ORCID http://orcid.org/0000-0002-5270-3678
Chad BrautigamDepartments of Biophysics and Microbiology, UT Southwestern Medical Center, Dallas, TX, USA.ORCID http://orcid.org/0000-0001-6563-1338
Shih-Chia TsoDepartment of Biophysics, UT Southwestern Medical Center, Dallas, TX, USA.
Huaying ZhaoDynamics of Macromolecular Assembly Section, Laboratory of Cellular Imaging and Macromolecular Biophysics, National Institute of Biomedical Imaging and Bioengineering, National Institutes of Health, Bethesda, MD, 20892, USA.ORCID http://orcid.org/0000-0002-8827-6639
Peter SchuckDynamics of Macromolecular Assembly Section, Laboratory of Cellular Imaging and Macromolecular Biophysics, National Institute of Biomedical Imaging and Bioengineering, National Institutes of Health, Bethesda, MD, 20892, USA.ORCID http://orcid.org/0000-0002-8859-6966
Sandro KellerBiophysics, Institute of Molecular Biosciences (IMB), NAWI Graz, University of Graz, Humboldtstr. 50/III, 8010, Graz, Austria.ORCID http://orcid.org/0000-0001-5469-8772
Margarida BastosCIQUP, Department of Chemistry and Biochemistry, Faculty of Sciences, University of Porto, Porto, Portugal. mbastos@fc.up.pt.ORCID http://orcid.org/0000-0001-7464-3568
National Institutes of Health · USUniversidad de Zaragoza · ESInstitut Pasteur · FRSouthwestern Medical Center · USUniversidade do Porto · PTCentre National de la Recherche Scientifique · FRUniversity of Graz · ATUniversity of Kaiserslautern · DEUniversity of Louisville · US

Funding

Foundation for the National Institutes of Health GM077422Fundação para a Ciência e a Tecnologia UIDB/00081/2020Ministerio de Economía y Competitividad BFU2016-78232-P
6 · The paper itself

Abstract

A small-scale ITC benchmarking study was performed involving 9 biophysics laboratories/facilities, to evaluate inter-laboratory and intra-laboratory basal levels of uncertainty. Our prime goal was to assess a number of important factors that can influence both the data gathered by this technique and the thermodynamic parameter values derived therefrom. In its first part, the study involved 5 laboratories and 13 different instruments, working with centrally prepared samples and the same experimental protocol. The second part involved 4 additional laboratories and 6 more instruments, where the users prepared their own samples according to provided instructions and did the experiments following the same protocol as in the first part. The study design comprised: (1) selecting a minimal set of laboratories; (2) providing very stable samples; (3) providing samples not requiring preparation or manipulation; and (4) providing a well-defined and detailed experimental protocol. Thus, we were able to assess: (i) the variability due to instrument and data analysis performed by each user on centrally prepared samples; (ii) the comparability of data retrieved when using 4 different software packages to analyze the same data, besides the data analysis carried out by the different users on their own experimental results; and (iii) the variability due to local sample preparation (second part of the study). Individual values, as well as averages and standard deviations for the binding parameters for EDTA-cation interaction, were used as metrics for comparing the equilibrium association constant (logK), enthalpy of interaction (ΔH), and the so-called "stoichiometry" (n), a concentration-correction factor.

Indexed as

LaboratoriesCalorimetryEdetic AcidProtein BindingThermodynamicsEdetic AcidBenchmark studyData treatmentIsothermal Titration Calorimetry (ITC)Ligand-bindingSample preparationStandard reaction

Identifiers

PMID33864101
OpenAlexW3152877001

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.