Evidence map›Paper›PMID 33863991›Full record

ArticleScientific reports2021

Subgenomic flavivirus RNA (sfRNA) associated with Asian lineage Zika virus identified in three species of Ugandan bats (family Pteropodidae).

Anna C Fagre, Juliette Lewis, Megan R Miller, Eric C Mossel, Julius J Lutwama, Luke Nyakarahuka, Teddy Nakayiki, Robert Kityo, Betty Nalikka, Jonathan S Towner and 6 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Anna C FagreColorado State University, Fort Collins, CO, USA.
Juliette LewisColorado State University, Fort Collins, CO, USA.
Megan R MillerColorado State University, Fort Collins, CO, USA.
Eric C MosselCenters for Disease Control and Prevention, Fort Collins, CO, USA.
Julius J LutwamaUganda Virus Research Institute, Entebbe, Uganda.
Luke NyakarahukaUganda Virus Research Institute, Entebbe, Uganda.
Teddy NakayikiUganda Virus Research Institute, Entebbe, Uganda.
Robert KityoMakerere University, Kampala, Uganda.
Betty NalikkaMakerere University, Kampala, Uganda.
Jonathan S TownerCenters for Disease Control and Prevention, Atlanta, GA, USA.
Brian R AmmanCenters for Disease Control and Prevention, Atlanta, GA, USA.
Tara K SealyCenters for Disease Control and Prevention, Atlanta, GA, USA.
Brian FoyColorado State University, Fort Collins, CO, USA.
Tony SchountzColorado State University, Fort Collins, CO, USA.
John AndersonColorado State University, Fort Collins, CO, USA.
Rebekah C KadingColorado State University, Fort Collins, CO, USA. Rebekah.Kading@colostate.edu.
Colorado State University · USCenters for Disease Control and Prevention · USUganda Virus Research Institute · UGMakerere University · UG

Funding

Biomedical Research Training for VeterinariansT32OD010437 · OD · COLORADO STATE UNIVERSITY · PI Gregg A Dean, KELLY S SANTANGELO · 2012 to 2026
$6.2M
NRSA Training CoreTL1TR002533 · NCATS · UNIVERSITY OF COLORADO DENVER · PI CICUTTO, LISA · 2018 to 2022
$3.0M
Zika virus urogenital tropism, pathogenesis and sexual transmissionR21AI129464 · NIAID · COLORADO STATE UNIVERSITY · PI FOY, BRIAN DAVID · 2017 to 2018
$377k
Serologic and virologic surveillance of bat and non-human primate samples for Zika virus in East AfricaR03AI128657 · NIAID · COLORADO STATE UNIVERSITY · PI KADING, REBEKAH CROCKETT · 2017 to 2018
$152k
NCATS NIH HHS TL1 TR002533NIAID NIH HHS R03 AI128657NIAID NIH HHS R21 AI129464NIH HHS T32 OD010437NIH HHS TL1 TR002533
6 · The paper itself

Abstract

Serological cross-reactivity among flaviviruses makes determining the prior arbovirus exposure of animals challenging in areas where multiple flavivirus strains are circulating. We hypothesized that prior infection with ZIKV could be confirmed through the presence of subgenomic flavivirus RNA (sfRNA) of the 3' untranslated region (UTR), which persists in tissues due to XRN-1 stalling during RNA decay. We amplified ZIKV sfRNA but not NS5 from three experimentally-infected Jamaican fruit bats, supporting the hypothesis of sfRNA tissue persistence. Applying this approach to 198 field samples from Uganda, we confirmed presence of ZIKV sfRNA, but not NS5, in four bats representing three species: Eidolon helvum (n = 2), Epomophorus labiatus (n = 1), and Rousettus aegyptiacus (n = 1). Amplified sequence was most closely related to Asian lineage ZIKV. Our results support the use of sfRNA as a means of identifying previous flavivirus infection and describe the first detection of ZIKV RNA in East African bats.

Indexed as

Cell LineageGenome, ViralVirus ReplicationAnimalsChiropteraChlorocebus aethiopsFemaleHost-Pathogen InteractionsMaleRNA StabilityRNA, ViralUgandaVero CellsZika VirusZika Virus InfectionRNA, Viral

Identifiers

PMID33863991
PMCPMC8052318
OpenAlexW3152898877

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.