Evidence map›Paper›PMID 33863957›Full record

ArticleScientific reports2021

Data valuation for medical imaging using Shapley value and application to a large-scale chest X-ray dataset.

Siyi Tang, Amirata Ghorbani, Rikiya Yamashita, Sameer Rehman, Jared A Dunnmon, James Zou, Daniel L Rubin

Abstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
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  8. MedShift: Automated Identification of Shift Data for Medical Image Dataset Curation.IEEE journal of biomedical and health informatics · 2023
    Article
  9. Article
  10. Towards More Efficient Data Valuation in Healthcare Federated Learning using Ensembling.Distributed, collaborative, and federated learning, and affordable AI and healthcare for resource diverse global health : Third MICCAI Workshop, DeCaF 2022 and Second MICCAI Workshop, FAIR 2022, held in conjunction with MICCAI 2022, Sin... · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Siyi TangDepartment of Electrical Engineering, Stanford University, Stanford, CA, USA.
Amirata GhorbaniDepartment of Electrical Engineering, Stanford University, Stanford, CA, USA.
Rikiya YamashitaDepartment of Biomedical Data Science, Stanford University, Stanford, CA, USA.
Sameer RehmanDepartment of Radiology, Stanford University, Stanford, CA, USA.
Jared A DunnmonDepartment of Computer Science, Stanford University, Stanford, CA, USA.
James ZouDepartment of Electrical Engineering, Stanford University, Stanford, CA, USA.
Daniel L RubinDepartment of Biomedical Data Science, Stanford University, Stanford, CA, USA. dlrubin@stanford.edu.

Funding

Role of Single Cell mRNA Variation in Systems Associated Electrically Excitable CU01MH098953 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI EBERWINE, JAMES H, KIM, JUNHYONG · 2012 to 2016
$11.4M
Stanford Medicine Center for Longevity and Healthy Aging Research Education CoreP30AG059307 · NIA · STANFORD UNIVERSITY · PI ZOU, JAMES · 2018 to 2025
$4.9M
INTEGRATING OMICS AND QUANTITATIVE IMAGING DATA IN CO-CLINICAL TRIALS TO PREDICT TREATMENT RESPONSE IN TRIPLE NEGATIVE BREAST CANCERU24CA226110 · NCI · BAYLOR COLLEGE OF MEDICINE · PI LEWIS, MICHAEL T., RUBIN, DANIEL L · 2019 to 2023
$3.2M
Qualification and Deployment of Imaging Biomarkers of Cancer Treatment ResponseU01CA190214 · NCI · STANFORD UNIVERSITY · PI RUBIN, DANIEL L · 2015 to 2020
$3.1M
Computing, Optimizing, and Evaluating Quantitative Cancer Imaging BiomarkersU01CA187947 · NCI · STANFORD UNIVERSITY · PI NAPEL, SANDY A., RUBIN, DANIEL L · 2015 to 2019
$2.9M
Distributed Learning of Deep Learning Models for Cancer ResearchU01CA242879 · NCI · STANFORD UNIVERSITY · PI KALPATHY-CRAMER, JAYASHREE, RUBIN, DANIEL L · 2019 to 2021
$1.2M
NCI NIH HHS U01 CA187947NCI NIH HHS U01 CA190214NCI NIH HHS U01 CA242879NCI NIH HHS U24 CA226110NIA NIH HHS P30 AG059307NIMH NIH HHS U01 MH098953
6 · The paper itself

Abstract

The reliability of machine learning models can be compromised when trained on low quality data. Many large-scale medical imaging datasets contain low quality labels extracted from sources such as medical reports. Moreover, images within a dataset may have heterogeneous quality due to artifacts and biases arising from equipment or measurement errors. Therefore, algorithms that can automatically identify low quality data are highly desired. In this study, we used data Shapley, a data valuation metric, to quantify the value of training data to the performance of a pneumonia detection algorithm in a large chest X-ray dataset. We characterized the effectiveness of data Shapley in identifying low quality versus valuable data for pneumonia detection. We found that removing training data with high Shapley values decreased the pneumonia detection performance, whereas removing data with low Shapley values improved the model performance. Furthermore, there were more mislabeled examples in low Shapley value data and more true pneumonia cases in high Shapley value data. Our results suggest that low Shapley value indicates mislabeled or poor quality images, whereas high Shapley value indicates data that are valuable for pneumonia detection. Our method can serve as a framework for using data Shapley to denoise large-scale medical imaging datasets.

Indexed as

AlgorithmsMachine LearningNeural Networks, ComputerDatasets as TopicDiagnostic ImagingHumansImage Processing, Computer-AssistedPneumoniaRadiography, Thoracic

Identifiers

PMID33863957
PMCPMC8052417

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.