Evidence map›Paper›PMID 33863889›Full record

ArticleNature communications2021

Design of multi-scale protein complexes by hierarchical building block fusion.

Yang Hsia, Rubul Mout, William Sheffler, Natasha I Edman, Ivan Vulovic, Young-Jun Park, Rachel L Redler, Matthew J Bick, Asim K Bera, Alexis Courbet and 10 more

Abstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed.

  1. Article
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  7. Chemical reviews · 2026
    Review
  8. Review
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  10. Article
  11. Review
  12. Stimuli-triggered formation ofCell biomaterials · 2026
    Article
  13. Review
  14. Review
  15. Article
  16. Inhibition of ice recrystallization with designed twistless helical repeat proteins.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Yang Hsia *Department of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0001-7467-8373
Rubul Mout *Department of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0001-6125-5873
William ShefflerDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Natasha I EdmanDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0002-7315-7127
Ivan VulovicDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Young-Jun ParkDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0003-2901-6949
Rachel L RedlerDepartment of Cell Biology and Skirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, NY, USA.
Matthew J BickDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Asim K BeraDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Alexis CourbetDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Alex KangDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
T J BrunetteDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Una NattermannDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Evelyn TsaiDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Ayesha SaleemDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Cameron M ChowDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0001-5351-6412
Damian EkiertDepartment of Cell Biology and Skirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, NY, USA.ORCID 0000-0002-2570-0404
Gira BhabhaDepartment of Cell Biology and Skirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, NY, USA.
David VeeslerDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0002-6019-8675
David BakerDepartment of Biochemistry, University of Washington, Seattle, WA, USA. dabaker@uw.edu.ORCID 0000-0001-7896-6217

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI Nozomi Ando, J Christopher Fromme · 2018 to 2026
$34.2M
User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI PAUL David ADAMS, Gregory L Hura · 2017 to 2026
$28.6M
TRAINING IN MOLECULAR AND CELLULAR BIOLOGYT32GM007270 · NIGMS · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2020
$21.0M
TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2012 to 2021
$14.7M
TRAINING IN MOLECULAR BIOPHYSICST32GM008268 · NIGMS · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M, ZHENG, NING · 1988 to 2023
$8.6M
Pixel Array Detector for Macromolecular CrystallographyS10OD021527 · OD · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2016 to 2016
$2.0M
Acquisition of a high resolution, high throughput cryo-electron microscopeS10OD023476 · OD · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M · 2017 to 2017
$2.0M
Dual-Beam Scanning Electron Microscope for New York Structural Biology CenterS10RR029300 · NCRR · NEW YORK STRUCTURAL BIOLOGY CENTER · PI STOKES, DAVID L. · 2010 to 2010
$2.0M
Structural Studies of Coronavirus Fusion ProteinsR01GM120553 · NIGMS · UNIVERSITY OF WASHINGTON · PI VEESLER, DAVID · 2016 to 2020
$1.7M
A Pixel Array Detector System for Small Angle X-ray ScatteringS10OD018483 · OD · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI CLASSEN, SCOTT · 2014 to 2014
$998k
Acquisition of Detector for JEOL 3200 FSC Electron MicroscopeS10OD019994 · OD · NEW YORK STRUCTURAL BIOLOGY CENTER · PI CARRAGHER, BRIDGET OLIVIA · 2015 to 2015
$600k
Howard Hughes Medical InstituteNCRR NIH HHS S10 RR029300NIAID NIH HHS HHSN272201700059CNIGMS NIH HHS P30 GM124165NIGMS NIH HHS P30 GM124169NIGMS NIH HHS P41 GM103310NIGMS NIH HHS R01 GM120553NIGMS NIH HHS T32 GM007270NIGMS NIH HHS T32 GM008268NIH HHS S10 OD018483NIH HHS S10 OD019994NIH HHS S10 OD021527NIH HHS S10 OD023476
6 · The paper itself

Abstract

A systematic and robust approach to generating complex protein nanomaterials would have broad utility. We develop a hierarchical approach to designing multi-component protein assemblies from two classes of modular building blocks: designed helical repeat proteins (DHRs) and helical bundle oligomers (HBs). We first rigidly fuse DHRs to HBs to generate a large library of oligomeric building blocks. We then generate assemblies with cyclic, dihedral, and point group symmetries from these building blocks using architecture guided rigid helical fusion with new software named WORMS. X-ray crystallography and cryo-electron microscopy characterization show that the hierarchical design approach can accurately generate a wide range of assemblies, including a 43 nm diameter icosahedral nanocage. The computational methods and building block sets described here provide a very general route to de novo designed protein nanomaterials.

Indexed as

Crystallography, X-RayMaterials ScienceMolecular Dynamics SimulationMultiprotein ComplexesNanostructuresRecombinant ProteinsSoftwareMultiprotein ComplexesRecombinant Proteins

Identifiers

PMID33863889
PMCPMC8052403

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.